| ADNP | Activity-dependent neuroprotector homeobox | Mus musculus | 9 | No | 1 | S | Yes |
| ADORA2A | Adenosine A2a receptor | Mus musculus | 2 | Unknown | 4 | | No |
| AHI1 | Abelson helper integration site 1 | Mus musculus | 3 | Unknown | – | S | No |
| ALDH5A1 | Aldehyde Dehydrogenase 5 family, member A1 | Mus musculus | 4 | Unknown | – | S | Yes |
| AMBRA1 | autophagy and beclin 1 regulator 1 | Mus musculus | 1 | Yes | 5 | | No |
| ANK2 | ankyrin 2, neuronal | Mus musculus | 2 | No | 1 | | No |
| ANKRD11 | ankyrin repeat domain 11 | Mus musculus | 3 | Unknown | 2 | S | No |
| APBA2 | amyloid beta (A4) precursor protein-binding, family A, member 2 | Mus musculus | 2 | Unknown | 4 | | No |
| APC | adenomatous polyposis coli | Mus musculus | 2 | No | 5 | | No |
| APP | amyloid beta (A4) precursor protein | Mus musculus | 1 | No | 5 | | No |
| ARHGAP32 | Rho GTPase activating protein 32 | Mus musculus | 3 | No | 4 | | Yes |
| ARHGAP33 | Rho GTPase activating protein 33 | Mus musculus | 6 | No | 5 | | Yes |
| ARHGEF10 | Rho guanine nucleotide exchange factor 10 | Mus musculus | 1 | No | 4 | | No |
| ARID1B | AT-rich interaction domain 1B | Mus musculus | 8 | No | 1 | S | Yes |
| ARNT2 | aryl hydrocarbon receptor nuclear translocator 2 | Danio rerio | 1 | No | 4 | | No |
| ARX | aristaless related homeobox | Mus musculus | 5 | Unknown | – | S | No |
| ASH1L | ASH1 like histone lysine methyltransferase | Mus musculus | 6 | No | 1 | | Yes |
| ATG7 | Autophagy related 7 | Mus musculus | 2 | No | 5 | | Yes |
| ARX | aristaless related homeobox | Danio rerio | 4 | Yes | – | S | No |
| ASH1L | ASH1 like histone lysine methyltransferase | Drosophila melanogaster | 2 | No | 1 | | No |
| ATP1A3 | Sodium potassium ATPase alpha 3 subunit | Mus musculus | 2 | Unknown | 4 | S | Yes |
| ATP2B2 | TPase, Ca++ transporting, plasma membrane 2 | Mus musculus | 1 | No | 3 | | No |
| ATP8A1 | Aminophospholipid translocase, filppase, 8a1 | Mus musculus | 2 | Yes | 5 | | No |
| ATRNL1 | Attractin-like 1 | Mus musculus | 3 | Unknown | 5 | | No |
| AUTS2 | AUTS2, activator of transcription and developmental regulator | Mus musculus | 2 | No | 3 | | No |
| AVP | arginine vasopressin | Rattus norvegicus | 6 | No | 5 | | Yes |
| AVPR1A | Arginine vasopressin receptor 1A | Mus musculus | 2 | Unknown | 3 | | No |
| BAIAP2 | BAI1-associated protein 2 | Mus musculus | 4 | Unknown | 5 | | Yes |
| BCKDK | branched chain ketoacid dehydrogenase kinase | Mus musculus | 3 | No | 2 | | Yes |
| AUTS2 | AUTS2, activator of transcription and developmental regulator | Danio rerio | 9 | No | 3 | | Yes |
| PARD3B | par-3 family cell polarity regulator beta | Drosophila melanogaster | 2 | No | 3 | | No |
| WDFY3 | WD repeat and FYVE domain containing 3 | Drosophila melanogaster | 4 | No | 2 | | No |
| BCKDK | branched chain ketoacid dehydrogenase kinase | Rattus norvegicus | 1 | No | 2 | | No |
| BCL11A | B-cell CLL/lymphoma 11A | Mus musculus | 2 | Yes | 2 | S | No |
| BDNF | brain-derived neurotrophic factor | Mus musculus | 1 | No | 5 | | No |
| BRINP1 | BMP/RA-inducible neural-specific protein 1 | Mus musculus | 4 | Unknown | 5 | | Yes |
| CACNA1C | calcium voltage-gated channel subunit alpha1 C | Danio rerio | 6 | Yes | – | S | Yes |
| CACNA1C | calcium voltage-gated channel subunit alpha1 C | Mus musculus | 14 | Unknown | – | S | No |
| CACNA1B | calcium voltage-gated channel subunit alpha1 B | Drosophila melanogaster | 4 | No | 4 | | No |
| CACNA1C | calcium voltage-gated channel subunit alpha1 C | Rattus norvegicus | 1 | Unknown | – | S | No |
| CACNA1F | Calcium channel, voltage-dependent, L type, alpha 1F subunit | Mus musculus | 1 | No | 4 | | No |
| CACNA1G | Cav3.1 T-type Ca2+ Channel | Mus musculus | 6 | Unknown | 4 | | No |
| CACNA1H | calcium channel, voltage-dependent, T type, alpha 1H subunit | Mus musculus | 1 | Unknown | 2 | | No |
| CACNA2D3 | calcium voltage-gated channel auxiliary subunit alpha2delta 3 | Mus musculus | 2 | Yes | 2 | | No |
| CADM1 | cell adhesion molecule 1 | Mus musculus | 4 | Unknown | 4 | | No |
| CADPS2 | Ca2+-dependent activator protein for secretion 2 | Mus musculus | 5 | Yes | 4 | | No |
| CAMK2A | calcium/calmodulin dependent protein kinase II alpha | Mus musculus | 2 | No | 4 | S | No |
| CAPRIN1 | RNA granule protein 105 (Caprin 1) | Mus musculus | 2 | Unknown | 3 | | No |
| CBLN1 | Cerebellin 1 precursor | Mus musculus | 7 | No | 5 | | No |
| CC2D1A | Coiled-coil and C2 domain containing 1A | Mus musculus | 10 | No | 3 | | No |
| CD38 | CD38 molecule | Mus musculus | 1 | Unknown | 4 | | No |
| CDKL5 | cyclin-dependent kinase-like 5 | Mus musculus | 4 | No | – | S | No |
| CELF4 | CUGBP, Elav-like family member 4 | Mus musculus | 7 | No | 3 | | No |
| CELF6 | CUGBP, Elav-like family member 6 | Mus musculus | 1 | No | 4 | | No |
| CEP290 | centrosomal protein 290 | Danio rerio | 2 | No | – | S | Yes |
| KCTD13 | potassium channel tetramerization domain containing 13 | Drosophila melanogaster | 11 | No | 4 | | No |
| CDK2 | cyclin dependent kinase 2 | Drosophila melanogaster | 2 | No | – | | No |
| CHD2 | chromodomain helicase DNA binding protein 2 | Danio rerio | 1 | No | 1 | S | No |
| CHD2 | chromodomain helicase DNA binding protein 2 | Mus musculus | 2 | No | 1 | S | No |
| CHD5 | chromodomain helicase DNA binding protein 5 | Mus musculus | 2 | No | 5 | | No |
| CHD7 | Chromodomain Helicase DNA Binding Protein 7 | Mus musculus | 4 | No | – | S | Yes |
| CHD8 | chromodomain helicase DNA binding protein 8 | Danio rerio | 22 | No | 1 | S | No |
| ABCA13 | ATP binding cassette subfamily A member 13 | Drosophila melanogaster | 3 | No | 4 | | No |
| SYNGAP1 | synaptic Ras GTPase activating protein 1a | Drosophila melanogaster | 2 | No | 1 | S | No |
| CHD8 | chromodomain helicase DNA binding protein 8 | Mus musculus | 22 | No | 1 | S | Yes |
| CIC | capicua transcriptional repressor | Mus musculus | 8 | Yes | 2 | S | Yes |
| CLSTN3 | calsyntenin 3 | Mus musculus | 1 | No | 5 | | No |
| CNTN4 | contactin 4 | Mus musculus | 1 | Unknown | 2 | | No |
| CNTNAP2 | contactin associated protein-like 2 | Mus musculus | 28 | Unknown | 2 | S | Yes |
| CNTNAP1 | contactin associated protein 1 | Mus musculus | 3 | Unknown | – | | No |
| CNTNAP2 | contactin associated protein-like 2 | Rattus norvegicus | 1 | Unknown | 2 | S | No |
| CNTNAP4 | contactin associated protein-like 4 | Mus musculus | 7 | No | 3 | | Yes |
| CRHR2 | Corticotropin releasing hormone receptor2 | Mus musculus | 2 | No | 5 | | No |
| CSNK1D | casein kinase 1, delta | Mus musculus | 3 | No | 6 | | No |
| CSNK1E | casein kinase 1, epsilon | Mus musculus | 1 | No | 4 | | No |
| CTNNB1 | catenin (cadherin associated protein), beta 1 | Mus musculus | 1 | Yes | 3 | | No |
| CTNND2 | Catenin(cadherin associated protein), delta 2 | Mus musculus | 1 | No | 2 | | No |
| CNTNAP2 | contactin associated protein-like 2 | Danio rerio | 15 | No | 2 | S | Yes |
| CTNND2 | Catenin(cadherin associated protein), delta 2 | Danio rerio | 20 | No | 2 | | Yes |
| CUL3 | cullin 3 | Mus musculus | 4 | No | 1 | | No |
| CXCR3 | chemokine (C-X-C motif) receptor 3 | Mus musculus | 1 | Unknown | 5 | | No |
| CYFIP1 | Cytoplasmic FMR1 interacting protein 1 | Mus musculus | 1 | No | 3 | | No |
| DAGLA | diacylglycerol lipasealpha | Mus musculus | 4 | No | 4 | | No |
| DEAF1 | DEAF1, transcription factor | Drosophila melanogaster | 17 | No | 2 | S | Yes |
| DEAF1 | DEAF1, transcription factor | Mus musculus | 9 | Yes | 2 | S | No |
| TRIP12 | thyroid hormone receptor interactor 12 | Drosophila melanogaster | 2 | No | 1 | S | No |
| TCF4 | transcription factor 4 | Drosophila melanogaster | 1 | No | 3 | S | No |
| DAB1 | Disabled homolog 1 | Mus musculus | 1 | Unknown | 5 | | No |
| DAB1 | Disabled homolog 1 | Rattus norvegicus | 1 | Unknown | 5 | | No |
| SLC6A3 | solute carrier family 6 member 3 | Drosophila melanogaster | 6 | No | 3 | | No |
| DHCR7 | 7-dehydrocholesterol reductase | Mus musculus | 5 | No | – | S | No |
| DISC1 | Disrupted in schizophrenia 1 | Mus musculus | 13 | Unknown | 3 | | No |
| DISC1 | Disrupted in schizophrenia 1 | Rattus norvegicus | 2 | Unknown | 3 | | No |
| DLG1 | discs large MAGUK scaffold protein 1 | Drosophila melanogaster | 7 | No | 4 | | No |
| DLG4 | discs, large homolog 4 (Drosophila) | Mus musculus | 1 | Unknown | 5 | | No |
| DLGAP1 | DLG associated protein 1 | Mus musculus | 2 | No | 3 | | No |
| DMD | Dystrophin | Mus musculus | 6 | Unknown | – | S | No |
| DMPK | dystrophia myotonica-protein kinase | Mus musculus | 2 | Unknown | – | S | No |
| DPP6 | dipeptidyl- petidase 6 | Mus musculus | 1 | No | 4 | | No |
| DPYSL3 | dihydropyrimidinase like 3 | Mus musculus | 1 | Yes | 4 | | No |
| DRD1 | Dopamine receptor D1 | Mus musculus | 2 | No | 4 | | No |
| DRD1 | Dopamine receptor D1 | Rattus norvegicus | 1 | No | 4 | | No |
| DRD3 | Dopamine receptor D3 | Mus musculus | 3 | Unknown | 4 | | No |
| DSCAM | DS cell adhesion molecule | Mus musculus | 11 | No | 1 | | No |
| DVL1 | Dishevelled segment polarity protein 1 | Mus musculus | 8 | No | 5 | | Yes |
| NLGN3 | neuroligin 3 | Drosophila melanogaster | 1 | No | 2 | | No |
| SRCAP | Snf2 related CREBBP activator protein | Drosophila melanogaster | 1 | No | 2 | | No |
| DRD4 | dopamine receptor D4 | Mus musculus | 1 | Unknown | – | | No |
| DSCAM | DS cell adhesion molecule | Drosophila melanogaster | 1 | No | 1 | | No |
| DVL3 | Dishevelled segment polarity protein 3 | Mus musculus | 5 | No | 4 | | Yes |
| DYRK1A | dual specificity tyrosine-Y- phosphorylation regulated kinase 1A | Mus musculus | 3 | No | 1 | S | No |
| EEF1A2 | eukaryotic translation elongation factor 1 alpha 2 | Mus musculus | 7 | No | – | S | No |
| EIF4E | Eukaryotic translation initiation factor 4E | Mus musculus | 2 | Yes | 4 | | Yes |
| EIF4EBP2 | eukaryotic translation initiation factor 4E binding protein 2 | Mus musculus | 5 | No | 5 | | Yes |
| EN2 | Engrailed homeobox 2 | Mus musculus | 5 | Unknown | 4 | | No |
| EPHA6 | EPH Receptor A6 | Mus musculus | 1 | Unknown | 5 | | No |
| EPS8 | epidermal growth factor receptor pathway substrate 8 | Mus musculus | 1 | No | 5 | | No |
| DYRK1A | dual specificity tyrosine-Y- phosphorylation regulated kinase 1A | Danio rerio | 2 | No | 1 | S | No |
| EPHB2 | EPH receptor B2 | Drosophila melanogaster | 2 | No | 4 | | No |
| ERBB4 | v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) | Mus musculus | 2 | Unknown | 5 | | No |
| ERBIN | erbb2 interacting protein | Mus musculus | 2 | No | 2 | | No |
| ESR2 | estrogen receptor 2 | Rattus norvegicus | 1 | No | 4 | | No |
| ESRRB | Estrogen-related receptor beta | Mus musculus | 2 | Unknown | 4 | | No |
| EXT1 | exostosin 1 | Mus musculus | 1 | No | 4 | | No |
| FAM19A3 | family with sequence similarity 19 member A3, C-C motif chemokine likeÃÂ | Mus musculus | 2 | No | 5 | | No |
| FEZF2 | FEZ family zinc finger 2 | Mus musculus | 1 | Unknown | 4 | | No |
| FGFR2 | fibroblast growth factor receptor 2ÃÂ | Mus musculus | 6 | No | 5 | | Yes |
| FMR1 | fragile X mental retardation 1 | Drosophila melanogaster | 56 | No | – | S | Yes |
| FMR1 | fragile X mental retardation 1 | Danio rerio | 3 | No | – | S | No |
| FAM19A2 | family with sequence similarity 19 member A2, C-C motif chemokine like | Danio rerio | 1 | No | 5 | | No |
| FMR1 | fragile X mental retardation 1 | Mus musculus | 53 | Unknown | – | S | Yes |
| FMR1 | fragile X mental retardation 1 | Rattus norvegicus | 3 | Unknown | – | S | No |
| FOLH1 | folate hydrolase (prostate-specific membrane antigen) 1 | Mus musculus | 4 | Yes | 5 | | Yes |
| FOXG1 | Forkhead Box G1 | Mus musculus | 1 | Unknown | – | S | No |
| FOXP1 | Forkhead box P1 | Mus musculus | 7 | Unknown | 2 | S | No |
| FOXP2 | forkhead box P2 | Mus musculus | 9 | Unknown | 3 | | No |
| FOXP2 | forkhead box P2 | Drosophila melanogaster | 14 | No | 3 | | No |
| GABRA5 | Gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5 | Mus musculus | 1 | Yes | 5 | | No |
| GABRB3 | gamma-aminobutyric acid type A receptor beta3 subunit | Mus musculus | 18 | Unknown | 2 | | Yes |
| EHMT1 | euchromatic histone lysine methyltransferase 1 | Drosophila melanogaster | 14 | No | 3 | S | Yes |
| GAD1 | glutamate decarboxylase 1 (brain, 67kDa) | Mus musculus | 1 | No | 5 | | No |
| GADD45B | growth arrest and DNA-damage-inducible, beta | Mus musculus | 1 | No | 5 | | No |
| GADD45B | growth arrest and DNA-damage-inducible, beta | Rattus norvegicus | 1 | No | 5 | | No |
| GAP43 | growth associated protein 43 | Mus musculus | 1 | Unknown | 5 | | No |
| GLRA2 | glycine receptor, alpha 2 | Mus musculus | 1 | Unknown | 5 | | No |
| GRID2 | glutamate receptor, ionotropic, delta 2 | Mus musculus | 2 | No | 4 | | No |
| GRIK2 | glutamate receptor, ionotropic, kainate 2 | Mus musculus | 4 | No | 3 | | Yes |
| GRIK4 | Glutamate receptor, ionotropic, kainate 4 | Mus musculus | 12 | No | 5 | | Yes |
| GRIN1 | glutamate receptor, ionotropic, N-methyl D-aspartate 1 | Mus musculus | 7 | No | 3 | | Yes |
| GNAQ | G protein subunit alpha q | Drosophila melanogaster | 2 | No | – | | No |
| HSP90B1 | heat shock protein 90 beta family member 1 | Drosophila melanogaster | 2 | No | – | | No |
| GRIA2 | Glutamate receptor, ionotropic, AMPA 2 | Mus musculus | 1 | Unknown | – | | No |
| GRID1 | glutamate receptor, ionotropic, delta 1 | Mus musculus | 1 | No | 3 | | No |
| GRIN2B | Glutamate receptor, ionotropic, N-methyl D-aspartate 2B | Mus musculus | 10 | No | 1 | | No |
| GRIP1 | Glutamate receptor interacting protein 1 | Mus musculus | 3 | Unknown | 2 | | No |
| GRM5 | glutamate receptor, metabotropic 5 | Mus musculus | 12 | No | 4 | | No |
| GRM8 | glutamate receptor, metabotropic 8 | Mus musculus | 1 | Unknown | 6 | | No |
| GRPR | gastrin-releasing peptide receptor | Mus musculus | 5 | Unknown | 5 | | No |
| GSK3B | glycogen synthase kinase 3 beta | Mus musculus | 1 | Unknown | 5 | | No |
| GSTM1 | Glutathione S-transferase mu 1 | Mus musculus | 1 | Unknown | 4 | | No |
| GTF2I | general transcription factor Iii | Mus musculus | 2 | Unknown | 4 | | No |
| GSC2 | goosecoid homeobox 2 | Mus musculus | 1 | Unknown | – | | No |
| HCN1 | hyperpolarization activated cyclic nucleotide gated potassium channel 1 | Rattus norvegicus | 4 | No | – | S | Yes |
| HDAC3 | Histone deacetylase 3 | Mus musculus | 1 | Yes | 5 | | No |
| HDAC4 | Histone deacetylase 4 | Mus musculus | 2 | Unknown | – | S | No |
| HDC | histidine decarboxylase | Mus musculus | 20 | No | 5 | | Yes |
| MECP2 | methyl-CpG binding protein 2 | Drosophila melanogaster | 113 | No | 2 | S | Yes |
| GIGYF2 | GRB10 interacting GYF protein 2 | Drosophila melanogaster | 2 | No | 2 | | No |
| NCKAP1 | NCK associated protein 1 | Drosophila melanogaster | 2 | No | 2 | | No |
| HGF | hepatocyte growth factor | Danio rerio | 2 | No | – | | No |
| HMGN1 | High mobility group nucleosome binding domain 1 | Mus musculus | 2 | Unknown | 3 | | No |
| HOMER1 | homer scaffolding protein 1 | Mus musculus | 4 | No | 4 | | No |
| HOMER1 | homer scaffolding protein 1 | Rattus norvegicus | 2 | No | 4 | | No |
| HOXA1 | Homeobox A1 | Mus musculus | 3 | Unknown | – | S | No |
| HTR1B | 5-hydroxytryptamine (serotonin) receptor 1B | Mus musculus | 2 | Unknown | 4 | | No |
| HTR2A | 5-hydroxytryptamine (serotonin) receptor 2A | Mus musculus | 4 | Unknown | 5 | | No |
| HTR3A | 5-hydroxytryptamine (serotonin) receptor 3A | Mus musculus | 3 | Unknown | 4 | | No |
| IFNG | Interferon gamma | Mus musculus | 3 | No | 5 | | Yes |
| IFNGR1 | Interferon gamma receptor 1 | Mus musculus | 1 | No | 5 | | No |
| IL1RAPL1 | interleukin 1 receptor accessory protein-like 1 | Mus musculus | 2 | Unknown | 4 | | No |
| IMMP2L | IMP2 inner mitochondrial membrane peptidase-like | Mus musculus | 2 | Unknown | 4 | | No |
| ITGB3 | integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) | Mus musculus | 2 | Unknown | 3 | | No |
| JAKMIP1 | janus kinase and microtubule interacting protein 1 | Mus musculus | 1 | Yes | 5 | | No |
| KMT5B | lysine methyltransferase 5B | Drosophila melanogaster | 1 | No | 1 | | No |
| HOMER2 | homer homolog 2 | Mus musculus | 1 | No | – | | No |
| HOMER3 | homer homolog 3 | Mus musculus | 1 | No | – | | No |
| KCNJ2 | potassium inwardly-rectifying channel, subfamily J, member 2 | Drosophila melanogaster | 4 | No | 5 | | No |
| KCNJ10 | potassium voltage-gated channel subfamily J member 10 | Danio rerio | 8 | No | 3 | | Yes |
| KCNMA1 | potassium large conductance calcium-activated channel, subfamily M, alpha member 1 | Mus musculus | 3 | Yes | 4 | | No |
| KCNQ2 | potassium voltage-gated channel, KQT-like subfamily, member 2 | Mus musculus | 1 | Unknown | 3 | | No |
| KCTD13 | potassium channel tetramerization domain containing 13 | Danio rerio | 13 | No | 4 | | Yes |
| KCTD13 | potassium channel tetramerization domain containing 13 | Mus musculus | 2 | Yes | 4 | | No |
| KDM6A | lysine demethylase 6A | Danio rerio | 3 | No | 2 | | No |
| KIRREL3 | Kin of Irregular Chiasm-like 3 | Mus musculus | 1 | No | 3 | | No |
| CHD7 | Chromodomain Helicase DNA Binding Protein 7 | Drosophila melanogaster | 37 | Yes | – | S | Yes |
| KMT2A | Lysine methyltransferase 2A | Mus musculus | 3 | No | 1 | S | No |
| CHD8 | chromodomain helicase DNA binding protein 8 | Drosophila melanogaster | 37 | No | 1 | S | Yes |
| EBF3 | early B-cell factor 3 | Drosophila melanogaster | 15 | No | – | S | Yes |
| LAT | linker for activation of T-cells | Danio rerio | 12 | No | 5 | | No |
| LRFN2 | leucine rich repeat and fibronectin type III domain containing 2 | Mus musculus | 2 | No | 4 | | No |
| LRRC4 | leucine rich repeat containing 4 | Mus musculus | 4 | No | 4 | | Yes |
| LRRC7 | Leucine rich repeat containing 7 | Mus musculus | 1 | Unknown | – | | No |
| MAGEL2 | MAGE like 2 | Mus musculus | 1 | No | 2 | S | No |
| MAOA | Monoamine Oxidase A | Mus musculus | 3 | Unknown | 4 | | No |
| MAPK1 | mitogen-activated protein kinase 1 | Mus musculus | 1 | Unknown | 5 | | No |
| MAPK3 | mitogen-activated protein kinase 3 | Danio rerio | 2 | No | 4 | | No |
| MAPK8IP2 | mitogen-activated protein kinase 8 interacting protein 2 | Mus musculus | 1 | Yes | 5 | | No |
| MBD3 | methyl-CpG binding domain protein 3 | Mus musculus | 1 | Unknown | 4 | | No |
| LAMC3 | laminin subunit gamma 3 | Drosophila melanogaster | 2 | No | 5 | | No |
| GABRB3 | gamma-aminobutyric acid type A receptor beta3 subunit | Drosophila melanogaster | 2 | No | 2 | | No |
| MBD2 | methyl-CpG binding domain protein 2 | Mus musculus | 2 | Unknown | – | | No |
| MCPH1 | microcephalin 1 | Mus musculus | 2 | Unknown | 4 | | No |
| MDGA2 | MAM domain containing glycosylphosphatidylinositol anchor 2 | Mus musculus | 2 | No | 4 | | No |
| MECP2 | methyl-CpG binding protein 2 | Danio rerio | 13 | No | 2 | S | Yes |
| MECP2 | methyl-CpG binding protein 2 | Mus musculus | 69 | Yes | 2 | S | Yes |
| MECP2 | methyl-CpG binding protein 2 | Rattus norvegicus | 3 | Unknown | 2 | S | No |
| MEF2C | Myocyte Enhancer Factor 2C | Mus musculus | 9 | Unknown | 4 | S | Yes |
| MET | MET proto-oncogene, receptor tyrosine kinase | Danio rerio | 1 | No | 2 | | No |
| MET | MET proto-oncogene, receptor tyrosine kinase | Mus musculus | 10 | Unknown | 2 | | No |
| DYRK1A | dual specificity tyrosine-Y- phosphorylation regulated kinase 1A | Drosophila melanogaster | 10 | No | 1 | S | No |
| NBEA | Neurobeachin | Mus musculus | 2 | Unknown | 4 | | No |
| NEGR1 | neuronal growth regulator 1 | Mus musculus | 9 | No | 5 | | Yes |
| NF1 | neurofibromin 1 | Drosophila melanogaster | 21 | No | – | S | Yes |
| NBEA | Neurobeachin | Danio rerio | 10 | Yes | 4 | | Yes |
| MYT1L | myelin transcription factor 1 like | Danio rerio | 2 | No | 1 | | No |
| NAA15 | N(alpha)-acetyltransferase 15, NatA auxiliary subunit | Drosophila melanogaster | 2 | No | 1 | S | No |
| NF1 | neurofibromin 1 | Mus musculus | 9 | Unknown | – | S | Yes |
| NLGN1 | neuroligin 1 | Mus musculus | 10 | Unknown | 3 | | No |
| NLGN2 | neuroligin 2 | Mus musculus | 4 | No | 4 | | No |
| NLGN2 | neuroligin 2 | Rattus norvegicus | 1 | No | 4 | | No |
| NLGN2 | neuroligin 2 | Drosophila melanogaster | 1 | No | 4 | | No |
| NLGN4X | neuroligin 4, X-linked | Drosophila melanogaster | 2 | No | 3 | | No |
| NLGN3 | neuroligin 3 | Mus musculus | 42 | Yes | 2 | | Yes |
| NLGN3 | neuroligin 3 | Rattus norvegicus | 1 | Yes | 2 | | No |
| NLGN4X | neuroligin 4, X-linked | Mus musculus | 3 | Unknown | 3 | | No |
| NOS2 | Nitric Oxide Synthase 2, inducible | Mus musculus | 1 | Unknown | 5 | | No |
| NPAS2 | neuronal PAS domain protein 2 | Mus musculus | 1 | Unknown | 4 | | No |
| NR3C2 | nuclear receptor subfamily 3, group C, member 2 | Mus musculus | 2 | Unknown | 3 | | No |
| NRCAM | Neural cell adhesion molecule | Mus musculus | 1 | Unknown | 4 | | No |
| NRG1 | neuregulin 1 | Mus musculus | 1 | No | 5 | | No |
| NRP2 | neuropilin 2 | Mus musculus | 4 | Unknown | 4 | | No |
| NRXN1 | neurexin 1 | Drosophila melanogaster | 60 | No | 2 | | Yes |
| GRIN2B | Glutamate receptor, ionotropic, N-methyl D-aspartate 2B | Drosophila melanogaster | 2 | No | 1 | | No |
| NRXN1 | neurexin 1 | Rattus norvegicus | 2 | Unknown | 2 | | Yes |
| NRXN1 | neurexin 1 | Mus musculus | 2 | Unknown | 2 | | No |
| NRXN2 | Neurexin2 | Mus musculus | 3 | No | 4 | | No |
| NTNG1 | Netrin G1 | Mus musculus | 1 | Unknown | 4 | S | No |
| OPHN1 | Oligophrenin 1 | Mus musculus | 1 | Unknown | 3 | | No |
| OPRM1 | opioid receptor, mu 1 | Mus musculus | 3 | Yes | 5 | | Yes |
| OTUD7A | OTU deubiquitinase 7A | Mus musculus | 2 | Yes | 3 | | No |
| OXT | oxytocin/neurophysin I prepropeptide [Homo sapiens (human) | Mus musculus | 7 | Yes | 4 | | Yes |
| CNTNAP2 | contactin associated protein-like 2 | Drosophila melanogaster | 8 | No | 2 | S | No |
| NTNG2 | Netrin G2 | Mus musculus | 1 | Unknown | – | | No |
| TBX1 | T-box1 | Drosophila melanogaster | 7 | No | 4 | | No |
| OXTR | Oxytocin receptor | Mus musculus | 13 | Unknown | 3 | | Yes |
| P2RX4 | purinergic receptor P2X, ligand-gated ion channel, 4 | Mus musculus | 2 | No | 5 | | No |
| PAFAH1B1 | platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 | Mus musculus | 2 | No | 5 | | No |
| PAX6 | paired box 6 | Rattus norvegicus | 2 | No | – | S | Yes |
| PCDH10 | protocadherin 10 | Mus musculus | 3 | Unknown | 4 | | Yes |
| PCDH19 | protocadherin 19 | Rattus norvegicus | 2 | No | – | S | Yes |
| PCDH19 | protocadherin 19 | Mus musculus | 4 | No | – | S | No |
| PACS1 | phosphofurin acidic cluster sorting protein 1 | Danio rerio | 2 | No | – | S | Yes |
| CTNND2 | Catenin(cadherin associated protein), delta 2 | Drosophila melanogaster | 2 | No | 2 | | No |
| SCN2A | sodium voltage-gated channel alpha subunit 2 | Drosophila melanogaster | 2 | No | 1 | | No |
| PARK2 | Parkinson disease (autosomal recessive, juvenile) 2, parkin | Mus musculus | 1 | Unknown | – | | No |
| PER1 | Period homolog 1 | Mus musculus | 1 | Unknown | 4 | | No |
| PGLYRP2 | peptidoglycan recognition protein 2 | Mus musculus | 1 | No | 5 | | No |
| PITX1 | paired-like homeodomain 1 | Mus musculus | 1 | Unknown | 4 | | No |
| PLAUR | plasminogen activator, urokinase receptor | Mus musculus | 1 | Unknown | 4 | | No |
| PLN | Phospholamban | Mus musculus | 1 | Unknown | 4 | | No |
| PLPPR4 | phospholipid phosphatase related 4 | Mus musculus | 8 | No | 5 | | Yes |
| POU3F2 | POU class 3 homeobox 2 | Mus musculus | 2 | No | 5 | | No |
| PRICKLE1 | prickle homolog 1 (Drosophila) | Mus musculus | 5 | No | 3 | | No |
| PRICKLE2 | prickle homolog 2 (Drosophila) | Mus musculus | 2 | No | 3 | | No |
| PRKCB | Protein Kinase C, beta | Mus musculus | 1 | Unknown | 3 | | No |
| PRKDC | Protein kinase, DNA activated, catalytic peptide | Mus musculus | 2 | No | 4 | | Yes |
| PRKN | parkin RBR E3 ubiquitin protein ligase | Rattus norvegicus | 1 | Unknown | 3 | | No |
| PTCHD1 | Patched domain containing 1 | Mus musculus | 7 | No | 2 | | Yes |
| PIK3R6 | phosphoinositide-3-kinase, regulatory subunit 6 | Mus musculus | 2 | Unknown | – | | No |
| PLXNB1 | plexin B1 | Drosophila melanogaster | 2 | No | 3 | | No |
| PTEN | phosphatase and tensin homolog | Drosophila melanogaster | 5 | No | 1 | S | Yes |
| PTEN | phosphatase and tensin homolog | Mus musculus | 22 | Unknown | 1 | S | Yes |
| PTGS2 | prostaglandin-endoperoxide synthase 2 | Mus musculus | 1 | No | 4 | | No |
| PVALB | Parvalbumin | Mus musculus | 3 | No | 5 | | No |
| RAI1 | retinoic acid induced 1 | Mus musculus | 2 | Unknown | 3 | S | No |
| RAPGEF4 | Rap guanine nucleotide exchange factor (GEF) 4 | Mus musculus | 1 | Unknown | 4 | | No |
| RASD1 | RAS, dexamethasone induced 1 | Mus musculus | 2 | No | 5 | | No |
| RBFOX1 | RNA binding protein, fox-1 homolog | Mus musculus | 2 | Unknown | 3 | | No |
| RELN | Reelin | Mus musculus | 9 | Unknown | 1 | | Yes |
| RBFOX2 | RNA binding protein, fox-1 homolog | Mus musculus | 1 | Unknown | – | | No |
| NBEA | Neurobeachin | Drosophila melanogaster | 13 | Yes | 4 | | No |
| RHEB | Ras homolog, mTORC1 binding | Danio rerio | 6 | No | – | S | Yes |
| RHEB | Ras homolog, mTORC1 binding | Drosophila melanogaster | 2 | No | – | S | No |
| RHEB | Ras homolog, mTORC1 binding | Mus musculus | 3 | No | – | S | No |
| RIMS1 | regulating synaptic membrane exocytosis 1 | Mus musculus | 10 | Yes | 2 | | No |
| MAPK3 | mitogen-activated protein kinase 3 | Drosophila melanogaster | 24 | No | 4 | | Yes |
| RLIM | ring finger protein, LIM domain interacting | Danio rerio | 11 | No | – | S | Yes |
| RPL10 | ribosomal protein L10 | Danio rerio | 11 | Yes | 4 | | Yes |
| RPS6KA3 | ribosomal protein S6 kinase, 90kDa, polypeptide 3 | Mus musculus | 1 | No | 4 | S | No |
| RORA | RAR related orphan receptor A | Danio rerio | 25 | No | – | S | Yes |
| POGZ | pogo transposable element derived with ZNF domain | Drosophila melanogaster | 2 | No | 1 | S | No |
| SCN1A | sodium channel, voltage-gated, type I, alpha subunit | Mus musculus | 18 | Unknown | 3 | S | Yes |
| SCN1A | sodium channel, voltage-gated, type I, alpha subunit | Rattus norvegicus | 2 | Unknown | 3 | S | Yes |
| SCN2A | sodium voltage-gated channel alpha subunit 2 | Mus musculus | 3 | Unknown | 1 | | No |
| SCN8A | sodium channel, voltage gated, type VIII, alpha subunit | Mus musculus | 1 | Unknown | 3 | | No |
| SEMA5A | Sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A | Mus musculus | 1 | Unknown | 3 | | No |
| SHANK1 | SH3 and multiple ankyrin repeat domains 1 | Mus musculus | 2 | Unknown | 3 | | No |
| RPS6KB1 | ribosomal protein S6 kinase, 70kDa, polypeptide 1 | Drosophila melanogaster | 3 | Yes | – | | Yes |
| RPS6KB1 | ribosomal protein S6 kinase, 70kDa, polypeptide 1 | Mus musculus | 1 | No | – | | No |
| SHANK2 | SH3 and multiple ankyrin repeat domains 2 | Mus musculus | 15 | No | 2 | | Yes |
| SHANK2 | SH3 and multiple ankyrin repeat domains 2 | Rattus norvegicus | 5 | No | 2 | | Yes |
| SHANK3 | SH3 and multiple ankyrin repeat domains 3 | Mus musculus | 54 | Unknown | 1 | S | Yes |
| SHANK3 | SH3 and multiple ankyrin repeat domains 3 | Rattus norvegicus | 4 | Unknown | 1 | S | Yes |
| Sin3A | SIN3 transcription regulator family member A | Drosophila melanogaster | 2 | No | 4 | S | No |
| SLC1A2 | solute carrier family 1 (glial high affinity glutamate transporter), member 2 | Mus musculus | 8 | No | – | S | Yes |
| SLC25A12 | solute carrier family 25 (Mitochondrial carrier, Aralar), member 12 | Mus musculus | 4 | Unknown | 4 | | No |
| Slc30a3 | Solute carrier family 30 (zinc transporter), member 3 | Mus musculus | 2 | Yes | 5 | | Yes |
| SLC33A1 | Solute carrier family 33 member 1 | Mus musculus | 2 | Unknown | 5 | | Yes |
| SLC4A10 | Solute carrier 4, sodium bicarbonate transporter, member 10 | Mus musculus | 1 | Unknown | 4 | | No |
| SLC6A1 | Solute carrier family 6 member 1 | Mus musculus | 1 | No | 2 | S | No |
| SLC6A3 | solute carrier family 6 member 3 | Mus musculus | 14 | No | 3 | | Yes |
| SHANK3 | SH3 and multiple ankyrin repeat domains 3 | Danio rerio | 5 | No | 1 | S | No |
| SLC16A8 | solute carrier family 16, member 8 (monocarboxylic acid transporter 3) | Mus musculus | 1 | No | – | | No |
| SLC6A3 | solute carrier family 6 member 3 | Rattus norvegicus | 4 | No | 3 | | Yes |
| SLC6A4 | solute carrier family 6 member 4 | Mus musculus | 8 | Unknown | 4 | | Yes |
| SLC6A4 | solute carrier family 6 member 4 | Rattus norvegicus | 3 | No | 4 | | No |
| SLC6A8 | Solute carrier family 6 member 8 | Mus musculus | 2 | Yes | 4 | | No |
| SLC7A5 | solute carrier family 7 member 5 | Mus musculus | 2 | No | 3 | | Yes |
| SLC9A6 | solute carrier family 9, subfamily A | Mus musculus | 3 | No | – | S | No |
| SLC9A9 | solute carrier family 9 member A9 | Mus musculus | 3 | Yes | 4 | | No |
| SLITRK5 | SLIT and NTRK-like family, member 5 | Mus musculus | 2 | No | 3 | | No |
| SPAST | Spastin | Mus musculus | 1 | No | 2 | | No |
| SRRM4 | Serine/arginine repetitive matrix 4 | Mus musculus | 2 | Yes | 5 | | No |
| ST8SIA2 | ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 | Mus musculus | 5 | Unknown | 3 | | Yes |
| STAT1 | Signal transducer and activator of transcription 1 | Mus musculus | 2 | No | 5 | | No |
| STK39 | Serine threonine Kinase 39 (STE20/SPS1 homolog, yeast) | Mus musculus | 1 | Unknown | 4 | | No |
| STXBP1 | syntaxin binding protein 1 | Mus musculus | 6 | Yes | 3 | S | Yes |
| SYN2 | Synapsin II | Mus musculus | 3 | No | 4 | | Yes |
| SYN3 | Syanpsin III | Mus musculus | 2 | No | 5 | | No |
| CACNA2D3 | calcium voltage-gated channel auxiliary subunit alpha2delta 3 | Drosophila melanogaster | 6 | No | 2 | | Yes |
| NCOR1 | nuclear receptor corepressor 1 | Drosophila melanogaster | 1 | No | 4 | | No |
| SYN1 | Synapsin I | Mus musculus | 1 | No | 4 | | No |
| SYNGAP1 | synaptic Ras GTPase activating protein 1a | Mus musculus | 9 | Unknown | 1 | S | No |
| TAOK2 | TAO kinase 2 | Mus musculus | 5 | No | 2 | | Yes |
| TBR1 | T-box, brain 1 | Mus musculus | 9 | No | 1 | | Yes |
| SYNGAP1 | synaptic Ras GTPase activating protein 1a | Danio rerio | 6 | Yes | 1 | S | Yes |
| TAOK2 | TAO kinase 2 | Drosophila melanogaster | 5 | No | 2 | | No |
| TBX1 | T-box1 | Mus musculus | 1 | Unknown | 4 | | No |
| TCF4 | transcription factor 4 | Mus musculus | 3 | No | 3 | S | Yes |
| TCF4 | transcription factor 4 | Rattus norvegicus | 5 | No | 3 | S | Yes |
| TERT | Telomerase reverse transcriptase | Mus musculus | 2 | No | 5 | | Yes |
| THRA | thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian) | Mus musculus | 1 | Unknown | 4 | | No |
| TOP3B | Topoisomerase (DNA) 3 Beta | Mus musculus | 2 | No | 4 | | No |
| TPH2 | Tryptophan hydroxylase 2 | Mus musculus | 3 | No | 6 | | No |
| TRAPPC6B | trafficking protein particle complex 6B | Danio rerio | 8 | No | – | S | No |
| TRPC6 | Transient receptor potential cation channel, subfamily C, member 6 | Mus musculus | 4 | No | 3 | | Yes |
| TSC1 | tuberous sclerosis 1 | Drosophila melanogaster | 11 | No | – | S | Yes |
| TOP3B | Topoisomerase (DNA) 3 Beta | Drosophila melanogaster | 4 | No | 4 | | No |
| TRPV1 | transient receptor potential cation channel, subfamily V, member 1 | Mus musculus | 1 | No | – | | No |
| KMT2C | lysine methyltransferase 2C | Drosophila melanogaster | 1 | No | 2 | S | No |
| TSC1 | tuberous sclerosis 1 | Mus musculus | 29 | Unknown | – | S | Yes |
| TSC2 | tuberous sclerosis 2 | Mus musculus | 15 | Unknown | 3 | S | Yes |
| TSC2 | tuberous sclerosis 2 | Rattus norvegicus | 3 | Unknown | 3 | S | Yes |
| TYR | tyrosinase (oculocutaneous albinism IA) | Mus musculus | 1 | Unknown | 5 | | No |
| UBA6 | ubiquitin-like modifier activating enzyme 6 | Mus musculus | 1 | No | 5 | | No |
| UBE3A | ubiquitin protein ligase E3A | Drosophila melanogaster | 64 | No | 3 | S | Yes |
| TSHZ3 | Teashirt zinc finger homeobox 3 | Mus musculus | 2 | No | 4 | | No |
| UBE3A | ubiquitin protein ligase E3A | Mus musculus | 30 | Unknown | 3 | S | Yes |
| UBE3B | ubiquitin protein ligase E3B | Mus musculus | 1 | No | 5 | | No |
| UCN3 | Urocortin 3 | Mus musculus | 2 | No | 5 | | No |
| UPF3B | UPF3B, regulator of nonsense mediated mRNA decay | Mus musculus | 3 | No | 2 | S | Yes |
| USP7 | Ubiquitin specific peptidase 7 | Mus musculus | 1 | No | 2 | | No |
| VLDLR | very low density lipoprotein receptor | Rattus norvegicus | 1 | Unknown | 5 | | No |
| VRK3 | vaccinia related kinase 3 | Mus musculus | 5 | Yes | 5 | | Yes |
| WDFY3 | WD repeat and FYVE domain containing 3 | Mus musculus | 4 | Unknown | 2 | | No |
| WWOX | WW domain containing oxidoreductase | Rattus norvegicus | 1 | No | 3 | | No |