Gene Scoring / Category S 215 genes
Database updated on July 7, 2025
Category:
Reports:
Reports:
| Status | Gene Symbol | Gene Name | Chromosome | Genetic Category | Gene Score | Syndromic | reports |
|---|---|---|---|---|---|---|---|
| ACTB | actin beta | 7 | Rare Single Gene Mutation, Syndromic | 1 | S | 11 | |
| ADGRL1 | adhesion G protein-coupled receptor L1 | 19 | Rare Single Gene Mutation, Syndromic | 3 | S | 5 | |
| ADNP | Activity-dependent neuroprotector homeobox | 20 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 95 | |
| ADSL | adenylosuccinate lyase | 22 | Rare Single Gene Mutation, Syndromic | 1 | S | 9 | |
| AGO2 | argonaute RISC catalytic component 2 | 8 | Rare Single Gene Mutation, Syndromic | 2 | S | 4 | |
| AHDC1 | AT-hook DNA binding motif containing 1 | 1 | Rare Single Gene Mutation, Syndromic | 1 | S | 32 | |
| ALDH5A1 | aldehyde dehydrogenase 5 family, member A1 (succinate-semialdehyde dehydrogenase ) | 6 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 19 | |
| ANKRD11 | ankyrin repeat domain 11 | 16 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 83 | |
| ANKRD17 | ankyrin repeat domain 17 | 4 | Rare Single Gene Mutation, Syndromic | 2 | S | 6 | |
| ANKS1B | ankyrin repeat and sterile alpha motif domain containing 1B | 12 | Rare Single Gene Mutation, Syndromic, Functional | 2 | S | 7 | |
| ARHGEF9 | Cdc42 guanine nucleotide exchange factor (GEF) 9 | X | Rare Single Gene Mutation, Syndromic | 1 | S | 20 | |
| ARID1A | AT-rich interaction domain 1A | 1 | Rare Single Gene Mutation, Syndromic, Functional | 3 | S | 9 | |
| ARID1B | AT-rich interaction domain 1B | 6 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 97 | |
| ARID2 | AT-rich interaction domain 2 | 12 | Rare Single Gene Mutation, Syndromic | 2 | S | 21 | |
| ARX | aristaless related homeobox | X | Rare Single Gene Mutation, Syndromic | 1 | S | 28 | |
| ASXL3 | Additional sex combs like 3 (Drosophila) | 18 | Rare Single Gene Mutation, Syndromic | 1 | S | 59 | |
| ATP1A1 | ATPase Na+/K+ transporting subunit alpha 1 | 1 | Rare Single Gene Mutation, Syndromic | 2 | S | 9 | |
| ATP1A3 | ATPase Na+/K+ transporting subunit alpha 3 | 19 | Rare Single Gene Mutation, Syndromic, Functional | 2 | S | 27 | |
| ATP2B1 | ATPase plasma membrane Ca2+ transporting 1 | 12 | Rare Single Gene Mutation, Syndromic | 3 | S | 2 | |
| ATP9A | ATPase phospholipid transporting 9A | 20 | Rare Single Gene Mutation, Syndromic | 3 | S | 6 | |
| BCL11A | B-cell CLL/lymphoma 11A (zinc finger protein) | 2 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 33 | |
| BICRA | BRD4 interacting chromatin remodeling complex associated protein | 19 | Rare Single Gene Mutation, Syndromic | 2 | S | 5 | |
| BRAF | v-raf murine sarcoma viral oncogene homolog B | 7 | Rare Single Gene Mutation, Syndromic | 1 | S | 23 | |
| BRSK2 | BR serine/threonine kinase 2 | 11 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 16 | |
| CACNA1A | Calcium channel, voltage-dependent, P/Q type, alpha 1A subunit | 19 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 48 | |
| CACNA1C | calcium channel, voltage-dependent, L type, alpha 1C subunit | 12 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 66 | |
| CAMK2A | calcium/calmodulin dependent protein kinase II alpha | 5 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 15 | |
| CAMK2D | calcium/calmodulin dependent protein kinase II delta | 4 | Rare Single Gene Mutation, Syndromic | 3 | S | 4 | |
| CBX1 | chromobox 1 | 17 | Rare Single Gene Mutation, Syndromic | 3 | S | 3 | |
| CDH2 | cadherin 2 | 18 | Rare Single Gene Mutation, Syndromic | 3 | S | 8 | |
| CDK19 | cyclin dependent kinase 19 | 6 | Rare Single Gene Mutation, Syndromic | 3 | S | 7 | |
| CDKL5 | cyclin-dependent kinase-like 5 | X | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 67 | |
| CELF2 | CUGBP Elav-like family member 2 | 10 | Rare Single Gene Mutation, Syndromic, Functional | 2 | S | 5 | |
| CEP290 | Centrosomal protein 290kDa | 12 | Rare Single Gene Mutation, Syndromic | 2 | S | 15 | |
| CERT1 | ceramide transporter 1 | 5 | Rare Single Gene Mutation, Syndromic | 3 | S | 8 | |
| CHAMP1 | chromosome alignment maintaining phosphoprotein 1 | 13 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 20 | |
| CHD1 | chromodomain helicase DNA binding protein 1 | 5 | Rare Single Gene Mutation, Syndromic | 2 | S | 14 | |
| CHD2 | Chromodomain helicase DNA binding protein 2 | 15 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 89 | |
| CHD3 | chromodomain helicase DNA binding protein 3 | 17 | Rare Single Gene Mutation, Syndromic | 1 | S | 25 | |
| CHD4 | chromodomain helicase DNA binding protein 4 | 12 | Rare Single Gene Mutation, Syndromic, Functional | 3 | S | 8 | |
| CHD7 | chromodomain helicase DNA binding protein 7 | 8 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 53 | |
| CHD8 | chromodomain helicase DNA binding protein 8 | 14 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 128 | |
| CLCN4 | chloride voltage-gated channel 4 | X | Rare Single Gene Mutation, Syndromic, Functional | 2 | S | 16 | |
| CNKSR2 | connector enhancer of kinase suppressor of Ras 2 | X | Rare Single Gene Mutation, Syndromic, Functional | 2 | S | 18 | |
| CNOT1 | CCR4-NOT transcription complex subunit 1 | 16 | Rare Single Gene Mutation, Syndromic | 2 | S | 12 | |
| CNOT3 | CCR4-NOT transcription complex subunit 3 | 19 | Rare Single Gene Mutation, Syndromic | 1 | S | 23 | |
| CNTNAP2 | contactin associated protein-like 2 | 7 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 2 | S | 105 | |
| CREBBP | CREB binding protein | 16 | Rare Single Gene Mutation, Syndromic, Genetic Association | 1 | S | 44 | |
| CSDE1 | cold shock domain containing E1 | 1 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 9 | |
| CSNK1G1 | casein kinase 1 gamma 1 | 15 | Rare Single Gene Mutation, Syndromic | 3 | S | 3 | |
| CSNK2A1 | casein kinase 2 alpha 1 | 20 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 21 | |
| CTCF | CCCTC-binding factor | 16 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 29 | |
| CTR9 | CTR9homolog, Paf1/RNA polymerase II complex component | 11 | Rare Single Gene Mutation, Syndromic | 3 | S | 9 | |
| CUL4B | cullin 4B | X | Rare Single Gene Mutation | 3 | S | 5 | |
| CUX2 | cut like homeobox 2 | 12 | Rare Single Gene Mutation, Syndromic | 2 | S | 17 | |
| DDX3X | DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked | X | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 62 | |
| DEAF1 | DEAF1 transcription factor | 11 | Rare Single Gene Mutation, Syndromic | 1 | S | 36 | |
| DHCR7 | 7-dehydrocholesterol reductase | 11 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 21 | |
| DHX9 | DExH-box helicase 9 | 1 | Rare Single Gene Mutation, Syndromic | 3 | S | 5 | |
| DLL1 | delta like canonical Notch ligand 1 | 6 | Rare Single Gene Mutation, Syndromic | 2 | S | 6 | |
| DMPK | dystrophia myotonica-protein kinase | 19 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 13 | |
| DNMT3A | DNA (cytosine-5-)-methyltransferase 3 alpha | 2 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 35 | |
| DYRK1A | Dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A | 21 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 94 | |
| EBF3 | early B-cell factor 3 | 10 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 25 | |
| EHMT1 | Euchromatic histone-lysine N-methyltransferase 1 | 9 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 45 | |
| ELP2 | elongator acetyltransferase complex subunit 2 | 18 | Rare Single Gene Mutation, Syndromic | 2 | S | 7 | |
| EP300 | E1A binding protein p300 | 22 | Rare Single Gene Mutation, Syndromic | 1 | S | 31 | |
| FBXO11 | F-box protein 11 | 2 | Rare Single Gene Mutation, Syndromic, Functional | 2 | S | 16 | |
| FGF13 | fibroblast growth factor 13 | X | Rare Single Gene Mutation, Syndromic, Genetic Association | 3 | S | 4 | |
| FMR1 | fragile X messenger ribonucleoprotein 1 | X | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 76 | |
| FOXG1 | Forkhead box G1 | 14 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 62 | |
| FOXP1 | forkhead box P1 | 3 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 86 | |
| FRMD5 | FERM domain containing 5 | 15 | Rare Single Gene Mutation, Syndromic, Functional | 3 | S | 5 | |
| FRYL | FRY like transcription coactivator | 4 | Rare Single Gene Mutation, Syndromic | 3 | S | 8 | |
| GABBR2 | gamma-aminobutyric acid type B receptor subunit 2 | 9 | Rare Single Gene Mutation, Syndromic, Functional | 2 | S | 16 | |
| GNAI1 | G protein subunit alpha i1 | 7 | Rare Single Gene Mutation, Syndromic | 1 | S | 6 | |
| H3-3B | H3.3 histone B | 17 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 3 | S | 7 | |
| HDAC4 | histone deacetylase 4 | 2 | Rare Single Gene Mutation, Syndromic, Genetic Association | 2 | S | 18 | |
| HERC1 | HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 | 15 | Rare Single Gene Mutation, Syndromic, Functional | 2 | S | 14 | |
| HIVEP2 | HIVEP zinc finger 2 | 6 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 16 | |
| HNRNPD | heterogeneous nuclear ribonucleoprotein D | 4 | Rare Single Gene Mutation, Syndromic | 2 | S | 5 | |
| HNRNPK | heterogeneous nuclear ribonucleoprotein K | 9 | Rare Single Gene Mutation, Syndromic | 2 | S | 13 | |
| HNRNPR | heterogeneous nuclear ribonucleoprotein R | 1 | Rare Single Gene Mutation, Syndromic, Functional | 2 | S | 8 | |
| HNRNPU | heterogeneous nuclear ribonucleoprotein U | 1 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 42 | |
| HNRNPUL2 | heterogeneous nuclear ribonucleoprotein U like 2 | 11 | Rare Single Gene Mutation, Syndromic | 2 | S | 4 | |
| IQSEC2 | IQ motif and Sec7 domain 2 | X | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 60 | |
| IRF2BPL | Interferon regulatory factor 2 binding protein-like | 14 | Rare Single Gene Mutation, Syndromic | 1 | S | 19 | |
| IRX5 | iroquois homeobox 5 | 16 | Rare Single Gene Mutation, Syndromic | 3 | S | 3 | |
| KANSL1 | KAT8 regulatory NSL complex subunit 1 | 17 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 13 | |
| KAT6A | K(lysine) acetyltransferase 6A | 8 | Rare Single Gene Mutation, Syndromic, Functional | 2 | S | 35 | |
| KCNB1 | potassium voltage-gated channel subfamily B member 1 | 20 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 32 | |
| KCNH1 | potassium voltage-gated channel subfamily H member 1 | 1 | Rare Single Gene Mutation | 3 | S | 6 | |
| KDM3B | lysine demethylase 3B | 5 | Rare Single Gene Mutation, Syndromic | 1 | S | 6 | |
| KIF1A | kinesin family member 1A | 2 | Rare Single Gene Mutation, Syndromic | 2 | S | 17 | |
| KIF5C | Kinesin family member 5C | 2 | Rare Single Gene Mutation, Syndromic, Functional | 2 | S | 17 | |
| KMT2A | Lysine (K)-specific methyltransferase 2A | 11 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 55 | |
| KMT2C | Lysine (K)-specific methyltransferase 2C | 7 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 44 | |
| KMT2E | Lysine (K)-specific methyltransferase 2E | 7 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 23 | |
| MACF1 | microtubule actin crosslinking factor 1 | 1 | Rare Single Gene Mutation, Syndromic, Functional | 3 | S | 12 | |
| MAGEL2 | MAGE-like 2 | 15 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 28 | |
| MBD5 | Methyl-CpG binding domain protein 5 | 2 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 48 | |
| MBOAT7 | membrane bound O-acyltransferase domain containing 7 | 19 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 24 | |
| MECP2 | Methyl CpG binding protein 2 | X | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 146 | |
| MED12L | mediator complex subunit 12L | 3 | Rare Single Gene Mutation, Syndromic | 2 | S | 8 | |
| MED13 | mediator complex subunit 13 | 17 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 19 | |
| MED13L | Mediator complex subunit 13-like | 12 | Rare Single Gene Mutation, Syndromic | 1 | S | 56 | |
| MEF2C | myocyte enhancer factor 2C | 5 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 58 | |
| MEIS2 | Meis homeobox 2 | 15 | Rare Single Gene Mutation, Syndromic | 1 | S | 14 | |
| MSL3 | MSL complex subunit 3 | X | Rare Single Gene Mutation, Syndromic | 1 | S | 9 | |
| MSX2 | msh homeobox 2 | 5 | Rare Single Gene Mutation, Syndromic | 3 | S | 2 | |
| MTOR | mechanistic target of rapamycin kinase | 1 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 36 | |
| NAA10 | N-alpha-acetyltransferase 10, NatA catalytic subunit | X | Rare Single Gene Mutation, Syndromic | 3 | S | 13 | |
| NAA15 | N(alpha)-acetyltransferase 15, NatA auxiliary subunit | 4 | Rare Single Gene Mutation, Syndromic | 1 | S | 28 | |
| NACC1 | nucleus accumbens associated 1 | 19 | Rare Single Gene Mutation, Syndromic | 1 | S | 12 | |
| NBEA | neurobeachin | 13 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 29 | |
| NF1 | neurofibromin 1 (neurofibromatosis, von Recklinghausen disease, Watson disease) | 17 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 46 | |
| NFIB | nuclear factor I B | 9 | Rare Single Gene Mutation, Syndromic | 2 | S | 8 | |
| NIPBL | Nipped-B homolog (Drosophila) | 5 | Rare Single Gene Mutation, Syndromic | 1 | S | 20 | |
| NR2F1 | nuclear receptor subfamily 2 group F member 1 | 5 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 2 | S | 29 | |
| NR3C2 | Nuclear receptor subfamily 3, group C, member 2 | 4 | Rare Single Gene Mutation, Syndromic | 1 | S | 12 | |
| NSD1 | nuclear receptor binding SET domain protein 1 | 5 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 39 | |
| NSD2 | nuclear receptor binding SET domain protein 2 | 4 | Rare Single Gene Mutation, Syndromic, Functional | 2 | S | 15 | |
| NTNG1 | netrin G1 | 1 | Rare Single Gene Mutation, Syndromic, Genetic Association | 2 | S | 8 | |
| PABPC1 | poly(A) binding protein cytoplasmic 1 | 8 | Rare Single Gene Mutation, Syndromic | 3 | S | 6 | |
| PACS1 | phosphofurin acidic cluster sorting protein 1 | 11 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 21 | |
| PCCB | propionyl-CoA carboxylase beta subunit | 3 | Rare Single Gene Mutation, Syndromic | 1 | S | 12 | |
| PCDH19 | protocadherin 19 | X | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 69 | |
| PHF21A | PHD finger protein 21A | 11 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 21 | |
| PHIP | pleckstrin homology domain interacting protein | 6 | Rare Single Gene Mutation, Syndromic | 1 | S | 29 | |
| PJA1 | praja ring finger ubiquitin ligase 1 | X | Syndromic | 3 | S | 1 | |
| POGZ | Pogo transposable element with ZNF domain | 1 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 68 | |
| POLR2A | RNA polymerase II subunit A | 17 | Rare Single Gene Mutation, Syndromic | 3 | S | 13 | |
| POLR3A | RNA polymerase III subunit A | 10 | Rare Single Gene Mutation, Syndromic | 3 | S | 14 | |
| POMGNT1 | protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) | 1 | Rare Single Gene Mutation, Syndromic | 1 | S | 10 | |
| PPFIA3 | PTPRF interacting protein alpha 3 | 19 | Rare Single Gene Mutation, Syndromic, Functional | 3 | S | 8 | |
| PPM1D | protein phosphatase, Mg2+/Mn2+ dependent 1D | 17 | Rare Single Gene Mutation, Syndromic | 2 | S | 11 | |
| PPP2R5C | protein phosphatase 2 regulatory subunit B'gamma | 14 | Rare Single Gene Mutation, Syndromic, Genetic Association | 3 | S | 5 | |
| PPP2R5D | Protein phosphatase 2, regulatory subunit B', delta | 6 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 42 | |
| PPP3CA | protein phosphatase 3 catalytic subunit alpha | 4 | Rare Single Gene Mutation, Syndromic | 3 | S | 13 | |
| PRODH | Proline dehydrogenase (oxidase) 1 | 22 | Rare Single Gene Mutation, Syndromic, Genetic Association | 2 | S | 8 | |
| PRPF8 | pre-mRNA processing factor 8 | 17 | Rare Single Gene Mutation, Syndromic | 3 | S | 11 | |
| PRR12 | proline rich 12 | 19 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 11 | |
| PSMD12 | proteasome 26S subunit, non-ATPase 12 | 17 | Rare Single Gene Mutation, Syndromic | 1 | S | 7 | |
| PTEN | phosphatase and tensin homolog (mutated in multiple advanced cancers 1) | 10 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 118 | |
| PTPN11 | protein tyrosine phosphatase, non-receptor type 11 | 12 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 31 | |
| PUF60 | poly(U) binding splicing factor 60 | 8 | Rare Single Gene Mutation, Syndromic | 3 | S | 5 | |
| RAI1 | retinoic acid induced 1 | 17 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 40 | |
| RERE | Arginine-glutamic acid dipeptide (RE) repeats | 1 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 20 | |
| RFX4 | regulatory factor X4 | 12 | Rare Single Gene Mutation, Syndromic, Functional | 3 | S | 3 | |
| RFX7 | regulatory factor X7 | 15 | Rare Single Gene Mutation, Syndromic | 3 | S | 4 | |
| RIMS2 | regulating synaptic membrane exocytosis 2 | 8 | Rare Single Gene Mutation, Syndromic, Genetic Association | 3 | S | 6 | |
| RNF135 | Ring finger protein 135 | 17 | Rare Single Gene Mutation, Syndromic, Genetic Association | 2 | S | 5 | |
| RNU4-2 | RNA, U4 small nuclear 2 | 12 | Syndromic | 1 | S | 12 | |
| RORB | RAR related orphan receptor B | 9 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 16 | |
| RNU2-2 | RNA, U2 small nuclear 2 | 11 | Syndromic | 1 | S | 2 | |
| RNU5B-1 | RNA, U5B small nuclear 1 | 15 | Syndromic | 1 | S | 2 | |
| RPS6KA3 | Ribosomal protein S6 kinase, 90kDa, polypeptide 3 | X | Rare Single Gene Mutation, Syndromic | 2 | S | 21 | |
| SATB1 | SATB homeobox 1 | 3 | Rare Single Gene Mutation, Syndromic | 1 | S | 5 | |
| SATB2 | SATB homeobox 2 | 2 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 53 | |
| SCAF4 | SR-related CTD associated factor 4 | 21 | Rare Single Gene Mutation, Syndromic | 2 | S | 8 | |
| SCN1A | sodium channel, voltage-gated, type I, alpha subunit | 2 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 110 | |
| SETD1A | SET domain containing 1A, histone lysine methyltransferase | 16 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 15 | |
| SETD1B | SET domain containing 1B | 12 | Rare Single Gene Mutation, Syndromic, Functional | 2 | S | 27 | |
| SETD5 | SET domain containing 5 | 3 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 47 | |
| SHANK3 | SH3 and multiple ankyrin repeat domains 3 | 22 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 177 | |
| SIN3A | SIN3 transcription regulator family member A | 15 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 18 | |
| SIN3B | SIN3 transcription regulator family member B | 19 | Rare Single Gene Mutation, Syndromic, Functional | 2 | S | 7 | |
| SLC6A1 | Solute carrier family 6 (neurotransmitter transporter), member 1 | 3 | Rare Single Gene Mutation, Syndromic, Genetic Association | 1 | S | 62 | |
| SLC9A1 | solute carrier family 9 member A1 | 1 | Rare Single Gene Mutation | 3 | S | 8 | |
| SLC9A6 | solute carrier family 9 (sodium/hydrogen exchanger), member 6 | X | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 24 | |
| SMARCA2 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 | 9 | Rare Single Gene Mutation, Syndromic, Genetic Association | 1 | S | 31 | |
| SMARCC2 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 | 12 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 20 | |
| SMC3 | structural maintenance of chromosomes 3 | 10 | Rare Single Gene Mutation, Syndromic | 2 | S | 16 | |
| SON | SONDNA binding protein | 21 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 26 | |
| SOX5 | SRY-box 5 | 12 | Rare Single Gene Mutation, Syndromic, Genetic Association | 1 | S | 24 | |
| SPTBN1 | spectrin beta, non-erythrocytic 1 | 2 | Rare Single Gene Mutation, Syndromic | 2 | S | 14 | |
| SRRM2 | serine/arginine repetitive matrix 2 | 16 | Rare Single Gene Mutation, Syndromic | 2 | S | 15 | |
| SRSF1 | serine and arginine rich splicing factor 1 | 17 | Rare Single Gene Mutation, Syndromic | 3 | S | 4 | |
| STXBP1 | Syntaxin binding protein 1 | 9 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 83 | |
| SUPT16H | SPT16 homolog, facilitates chromatin remodeling subunit | 14 | Rare Single Gene Mutation, Syndromic | 2 | S | 10 | |
| SYNGAP1 | synaptic Ras GTPase activating protein 1 | 6 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 123 | |
| TAF4 | TATA-box binding protein associated factor 4 | 20 | Rare Single Gene Mutation, Syndromic | 2 | S | 5 | |
| TANC2 | etratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 | 17 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 20 | |
| TAOK1 | TAO kinase 1 | 17 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 14 | |
| TBCK | TBC1 domain containing kinase | 4 | Rare Single Gene Mutation, Syndromic | 1 | S | 6 | |
| TCEAL1 | transcription elongation factor A like 1 | X | Rare Single Gene Mutation, Syndromic | 3 | S | 4 | |
| TCF20 | Transcription factor 20 (AR1) | 22 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 33 | |
| TCF4 | Transcription factor 4 | 18 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 79 | |
| TLK2 | tousled-like kinase 2 | 17 | Rare Single Gene Mutation, Syndromic | 1 | S | 25 | |
| TRAF7 | TNF receptor associated factor 7 | 16 | Rare Single Gene Mutation, Syndromic | 1 | S | 11 | |
| TRIM8 | tripartite motif containing 8 | 10 | Rare Single Gene Mutation, Syndromic | 3 | S | 6 | |
| TRIP12 | Thyroid hormone receptor interactor 12 | 2 | Rare Single Gene Mutation, Syndromic | 1 | S | 43 | |
| TRRAP | transformation/transcription domain associated protein | 7 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 20 | |
| TSC1 | tuberous sclerosis 1 | 9 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 40 | |
| TSC2 | tuberous sclerosis 2 | 16 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 64 | |
| TTN | titin | 2 | Rare Single Gene Mutation, Syndromic | 2 | S | 35 | |
| UBE3A | ubiquitin protein ligase E3A | 15 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 54 | |
| UNC13A | unc-13 homolog A | 19 | Rare Single Gene Mutation, Syndromic | 2 | S | 11 | |
| UPF3B | UPF3B, regulator of nonsense mediated mRNA decay | X | Rare Single Gene Mutation, Syndromic | 1 | S | 20 | |
| UGGT1 | UDP-glucose glycoprotein glucosyltransferase 1 | 2 | Rare Single Gene Mutation, Syndromic | 3 | S | 5 | |
| USP7 | Ubiquitin specific peptidase 7 (herpes virus-associated) | 16 | Rare Single Gene Mutation, Syndromic, Functional | 2 | S | 17 | |
| USP9X | ubiquitin specific peptidase 9 X-linked | X | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 21 | |
| VPS13B | vacuolar protein sorting 13 homolog B (yeast) | 8 | Rare Single Gene Mutation, Syndromic, Genetic Association, Functional | 1 | S | 32 | |
| WAC | WW domain containing adaptor with coiled-coil | 10 | Rare Single Gene Mutation, Syndromic | 1 | S | 33 | |
| YWHAG | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma | 7 | Rare Single Gene Mutation, Syndromic | 3 | S | 15 | |
| YY1 | YY1transcription factor | 14 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 11 | |
| ZBTB20 | Zinc finger and BTB domain containing 20 | 3 | Rare Single Gene Mutation, Syndromic | 1 | S | 32 | |
| ZFHX3 | zinc finger homeobox 3 | 16 | Rare Single Gene Mutation, Syndromic | 3 | S | 13 | |
| ZFX | zinc finger protein X-linked | X | Rare Single Gene Mutation, Syndromic | 3 | S | 4 | |
| ZMIZ1 | zinc finger MIZ-type containing 1 | 10 | Rare Single Gene Mutation, Syndromic, Functional | 2 | S | 12 | |
| ZMYM2 | zinc finger MYM-type containing 2 | 13 | Rare Single Gene Mutation, Syndromic | 2 | S | 10 | |
| ZMYND8 | zinc finger MYND-type containing 8 | 20 | Rare Single Gene Mutation, Syndromic | 1 | S | 9 | |
| ZNF292 | zinc finger protein 292 | 6 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 15 | |
| ZNF462 | Zinc finger protein 462 | 9 | Rare Single Gene Mutation, Syndromic, Functional | 1 | S | 19 | |
| ZFHX4 | zinc finger homeobox 4 | 8 | Rare Single Gene Mutation, Syndromic | 3 | S | 4 |