Human Gene Module / Chromosome 1 / ASTN1

ASTN1astrotactin 1

SFARI Gene Score
1
High Confidence Criteria 1.1
Autism Reports / Total Reports
4 / 6
Rare Variants / Common Variants
20 / 0
Aliases
-
Associated Syndromes
-
Chromosome Band
1q25.2
Associated Disorders
-
Relevance to Autism

Levine et al., 2026 described eighteen individuals from twelve unrelated families with biallelic, ultra-rare, predicted damaging variants in ASTN1 and one individual with heterozygous variants in both ASTN1 and ASTN2 presenting with a variable neurodevelopmental disorder characterized by mild to profound developmental delay or intellectual disability, autism or autistic features, ADHD, epilepsy, dysmorphic facial features, hypotonia, spasticity, ataxia, and structural brain abnormalities. A homozygous missense variant in the ASTN1 gene was previously identified in an ASD proband born to consanguineous Middle Eastern parents in Tuncay et al., 2022, while additional de novo heterozygous variants in the ASTN1 gene, including a de novo loss-of-function variant and several de novo missense variants, have been reported in ASD probands from the iHART cohort, the SPARK cohort, and a Chinese ASD cohort (Ruzzo et al., 2019; Zhou et al., 2022; Yuan et al., 2023).

Molecular Function

Astrotactin is a neuronal adhesion molecule required for glial-guided migration of young postmitotic neuroblasts in cortical regions of developing brain, including cerebrum, hippocampus, cerebellum, and olfactory bulb.

SFARI Genomic Platforms
Reports related to ASTN1 (6 Reports)
# Type Title Author, Year Autism Report Associated Disorders
1 Support Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks Ruzzo EK , et al. (2019) Yes -
2 Support - Tuncay IO et al. (2022) Yes ADHD, DD, ID
3 Support - Zhou X et al. (2022) Yes -
4 Support - Yuan B et al. (2023) Yes -
5 Support - Akif Ayaz et al. (2025) No -
6 Primary - Jesse M Levine et al. (2026) No ASD or autistic features, ADHD
Rare Variants   (20)
Status Allele Change Residue Change Variant Type Inheritance Pattern Parental Transmission Family Type PubMed ID Author, Year
c.1599-14G>A - intron_variant Unknown - Simplex 41544630 Jesse M Levine et al. (2026)
c.177del p.Ser60ArgfsTer90 frameshift_variant De novo - - 36881370 Yuan B et al. (2023)
c.1245T>C p.His415= synonymous_variant De novo - Simplex 35982159 Zhou X et al. (2022)
c.3299C>T p.Pro1100Leu missense_variant De novo - Unknown 35982159 Zhou X et al. (2022)
c.1270+1G>A - splice_site_variant Unknown - Simplex 41544630 Jesse M Levine et al. (2026)
c.2773A>G p.Met925Val missense_variant De novo - Multiplex 35982159 Zhou X et al. (2022)
c.1446C>G p.Cys482Trp missense_variant De novo - Multiplex 31398340 Ruzzo EK , et al. (2019)
c.1549C>T p.Arg517Ter stop_gained Familial Both parents Simplex 39667727 Akif Ayaz et al. (2025)
c.1523+1G>T - splice_site_variant Familial Both parents Simplex 41544630 Jesse M Levine et al. (2026)
c.1736+5G>A - splice_site_variant Familial Both parents Simplex 41544630 Jesse M Levine et al. (2026)
c.2770C>T p.His924Tyr missense_variant Familial Maternal Simplex 41544630 Jesse M Levine et al. (2026)
c.2773A>G p.Met925Val missense_variant Familial Paternal Simplex 41544630 Jesse M Levine et al. (2026)
c.3283A>C p.Met1095Leu missense_variant Familial Both parents Simplex 35190550 Tuncay IO et al. (2022)
c.3283A>C p.Met1095Leu missense_variant Familial Paternal Simplex 41544630 Jesse M Levine et al. (2026)
c.1132C>T p.Arg378Ter stop_gained Familial Both parents Multiplex 41544630 Jesse M Levine et al. (2026)
c.838_839delGA p.Glu280LysfsTer11 frameshift_variant Unknown - Simplex 41544630 Jesse M Levine et al. (2026)
c.2224G>C p.Gly742Arg missense_variant Familial Both parents Multiplex 41544630 Jesse M Levine et al. (2026)
c.3334C>T p.Arg1112Ter stop_gained Familial Both parents Extended multiplex 41544630 Jesse M Levine et al. (2026)
c.3125delAinsGACCACAAGTG p.Glu1042GlyfsTer28 frameshift_variant Unknown - Simplex 41544630 Jesse M Levine et al. (2026)
c.3159_3160del p.Gln1053HisfsTer13 frameshift_variant Familial Both parents Multiplex 41544630 Jesse M Levine et al. (2026)
Common Variants  

No common variants reported.

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