Human Gene Module / Chromosome 3 / BSN

BSNbassoon presynaptic cytomatrix protein

SFARI Gene Score
3
Suggestive Evidence Criteria 3.1
Autism Reports / Total Reports
8 / 11
Rare Variants / Common Variants
13 / 0
Aliases
-
Associated Syndromes
-
Chromosome Band
3p21.31
Associated Disorders
-
Relevance to Autism

De novo loss-of-function variants in the BSN gene have been identified in an ASD proband from the SPARK cohort (Trost et al., 2022) and in a Japanese ASD proband who also presented with developmental delay, intellectual disability, and epilepsy (Furukawa et al., 2025), while additional de novo missense and synonymous variants in this gene have been reported in ASD probands from the Autism Sequencing Consortium, the SPARK cohort, and the MSSNG cohort (De Rubeis et al., 2014; Yuen et al., 2017; Feliciano et al., 2019; Satterstrom et al., 2020; Zhou et al., 2022; Fu et al., 2022; Trost et al., 2022). Heterozygous and compound heterozygous variants in BSN have also been reported in individuals with epilepsy (Ye et al., 2023), and a genome-wide association study of febrile seizures in 7635 cases and 83,966 controls in Skotte et al., 2022 identified BSN as a novel loci with a P-value < 5.0E-10. Altrock et al., 2003 had previously demonstrated that mutant mice expressing a form of Bsn lacking the central exons critical for anchoring Bsn to the cytomatrix at the presynaptic active zone displayed a reduction in normal synaptic transmission that was attributable to inactivation of a significant fraction of glutamatergic synapses, an inability of vesicles at these synapses to fuse, and spontaneous epileptic seizures.

Molecular Function

Neurotransmitters are released from a specific site in the axon terminal called the active zone, which is composed of synaptic vesicles and a meshwork of cytoskeleton underlying the plasma membrane. The protein encoded by this gene is thought to be a scaffolding protein involved in organizing the presynaptic cytoskeleton. The gene is expressed primarily in neurons in the brain. A similar gene product in rodents is concentrated in the active zone of axon terminals and tightly associated with cytoskeletal structures, and is essential for regulating neurotransmitter release from a subset of synapses.

SFARI Genomic Platforms
Reports related to BSN (11 Reports)
# Type Title Author, Year Autism Report Associated Disorders
1 Support - Wilko D Altrock et al. (2003) No -
2 Support Synaptic, transcriptional and chromatin genes disrupted in autism De Rubeis S , et al. (2014) Yes -
3 Support Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder C Yuen RK et al. (2017) Yes -
4 Support Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes Feliciano P et al. (2019) Yes -
5 Support Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism Satterstrom FK et al. (2020) Yes -
6 Positive association - Line Skotte et al. (2022) No -
7 Support - Zhou X et al. (2022) Yes -
8 Support - Fu JM et al. (2022) Yes -
9 Support - Trost B et al. (2022) Yes -
10 Support - Tingting Ye et al. (2023) No -
11 Primary - Sawako Furukawa et al. (2025) Yes -
Rare Variants   (13)
Status Allele Change Residue Change Variant Type Inheritance Pattern Parental Transmission Family Type PubMed ID Author, Year
c.10615G>C p.Asp3539His missense_variant De novo - - 35982160 Fu JM et al. (2022)
c.11479A>C p.Thr3827Pro missense_variant De novo - - 35982160 Fu JM et al. (2022)
c.7882C>T p.Arg2628Cys missense_variant De novo - - 25363760 De Rubeis S , et al. (2014)
c.7804C>T p.Arg2602Cys missense_variant De novo - Simplex 35982159 Zhou X et al. (2022)
c.8980C>T p.Arg2994Trp missense_variant De novo - Simplex 35982159 Zhou X et al. (2022)
c.5919A>G p.Pro1973= synonymous_variant De novo - Simplex 35982159 Zhou X et al. (2022)
c.10436C>T p.Ala3479Val missense_variant De novo - Unknown 35982159 Zhou X et al. (2022)
c.4838C>T p.Pro1613Leu missense_variant De novo - Simplex 36368308 Trost B et al. (2022)
c.11249G>A p.Arg3750Gln missense_variant De novo - - 31981491 Satterstrom FK et al. (2020)
c.6263dupC p.Ala2088fs frameshift_variant De novo - Unknown 36368308 Trost B et al. (2022)
c.2301G>A p.Thr767= synonymous_variant De novo - Multiplex 28263302 C Yuen RK et al. (2017)
c.4257T>C p.Tyr1419= synonymous_variant De novo - Simplex 31452935 Feliciano P et al. (2019)
c.4971dupC p.Arg1659GlnfsTer23 frameshift_variant De novo - Simplex 39610113 Sawako Furukawa et al. (2025)
Common Variants  

No common variants reported.

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