CERT1ceramide transporter 1
Autism Reports / Total Reports
5 / 8Rare Variants / Common Variants
31 / 0Aliases
-Associated Syndromes
-Chromosome Band
5q13.3Associated Disorders
-Relevance to Autism
De novo missense variants in the CERT1 gene have been identified in multiple ASD probands (De Rubeis et al., 2014; Iossifov et al., 2014; Takata et al., 2018; Zhou et al., 2022). Three male patients with impaired intellectual development from the Deciphering Developmental Disorders 2015 study were identified with the same de novo p.Ser132Leu missense variant in the CERT1 gene; one of these three patients also presented with stereotypic behavior. Gehin et al., 2023 characterized 31 unrelated individuals with 22 CERT1 missense variants presenting with a neurodevelopmental syndrome characterized by infantile hypotonia, mild dysmorphic features, variable degrees of intellectual disability, motor and speech delays, increased pain tolerance, and seizures; 19/27 (70%) of the individuals in this study were either diagnosed with autism spectrum disorder (ASD) or presented with possible ASD, and several of the CERT1 missense variants identified in affected individuals were experimentally shown to result in gain-of-function effects.
Molecular Function
This gene encodes a kinase that specifically phosphorylates the N-terminal region of the non-collagenous domain of the alpha 3 chain of type IV collagen, known as the Goodpasture antigen. Goodpasture disease is the result of an autoimmune response directed at this antigen. One isoform of this protein is also involved in ceramide intracellular transport.
External Links
SFARI Genomic Platforms
Reports related to CERT1 (8 Reports)
# | Type | Title | Author, Year | Autism Report | Associated Disorders |
---|---|---|---|---|---|
1 | Support | Synaptic, transcriptional and chromatin genes disrupted in autism | De Rubeis S , et al. (2014) | Yes | - |
2 | Support | The contribution of de novo coding mutations to autism spectrum disorder | Iossifov I et al. (2014) | Yes | - |
3 | Support | Large-scale discovery of novel genetic causes of developmental disorders | Deciphering Developmental Disorders Study (2014) | No | Stereotypy |
4 | Support | Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder | Takata A , et al. (2018) | Yes | - |
5 | Support | - | Zhou X et al. (2022) | Yes | - |
6 | Primary | - | Gehin C et al. (2023) | Yes | ADHD, epilepsy/seizures, stereotypy |
7 | Support | - | Sanchis-Juan A et al. (2023) | No | - |
8 | Support | - | Hosneara Akter et al. () | No | - |
Rare Variants (31)
Status | Allele Change | Residue Change | Variant Type | Inheritance Pattern | Parental Transmission | Family Type | PubMed ID | Author, Year |
---|---|---|---|---|---|---|---|---|
c.159G>A | p.Trp53Ter | stop_gained | Unknown | - | - | 39342494 | Hosneara Akter et al. () | |
c.676C>T | p.Arg226Cys | missense_variant | De novo | - | - | 35982159 | Zhou X et al. (2022) | |
c.1751A>G | p.His584Arg | missense_variant | De novo | - | - | 35982159 | Zhou X et al. (2022) | |
c.663T>G | p.Ser221Arg | missense_variant | Unknown | - | - | 36976648 | Gehin C et al. (2023) | |
c.779C>T | p.Ser260Leu | missense_variant | De novo | - | - | 36976648 | Gehin C et al. (2023) | |
c.787T>C | p.Ser263Pro | missense_variant | De novo | - | - | 36976648 | Gehin C et al. (2023) | |
c.797C>G | p.Ser266Cys | missense_variant | De novo | - | - | 36976648 | Gehin C et al. (2023) | |
c.805A>C | p.Ser269Arg | missense_variant | De novo | - | - | 36976648 | Gehin C et al. (2023) | |
c.880A>G | p.Thr294Ala | missense_variant | De novo | - | - | 36976648 | Gehin C et al. (2023) | |
c.1111G>A | p.Gly371Arg | missense_variant | De novo | - | - | 36976648 | Gehin C et al. (2023) | |
c.1112G>A | p.Gly371Glu | missense_variant | De novo | - | - | 36976648 | Gehin C et al. (2023) | |
c.1124C>T | p.Thr375Ile | missense_variant | De novo | - | - | 36976648 | Gehin C et al. (2023) | |
c.1135A>G | p.Thr379Ala | missense_variant | De novo | - | - | 36976648 | Gehin C et al. (2023) | |
c.1256A>G | p.Tyr419Cys | missense_variant | Unknown | - | - | 36976648 | Gehin C et al. (2023) | |
c.1271C>G | p.Thr424Arg | missense_variant | Unknown | - | - | 36976648 | Gehin C et al. (2023) | |
c.1318G>C | p.Gly440Arg | missense_variant | De novo | - | - | 36976648 | Gehin C et al. (2023) | |
c.1369G>C | p.Ala457Pro | missense_variant | De novo | - | - | 36976648 | Gehin C et al. (2023) | |
c.1373T>C | p.Leu458Pro | missense_variant | De novo | - | - | 36976648 | Gehin C et al. (2023) | |
c.1481G>C | p.Arg494Thr | missense_variant | Unknown | - | - | 36976648 | Gehin C et al. (2023) | |
c.1525A>G | p.Ile509Val | missense_variant | De novo | - | - | 36976648 | Gehin C et al. (2023) | |
c.1655A>G | p.Glu552Gly | missense_variant | De novo | - | - | 36976648 | Gehin C et al. (2023) | |
c.1883C>T | p.Pro628Leu | missense_variant | De novo | - | - | 36976648 | Gehin C et al. (2023) | |
c.928T>C | p.Phe310Leu | missense_variant | De novo | - | - | 25363760 | De Rubeis S , et al. (2014) | |
c.2238A>G | p.Ala746= | synonymous_variant | De novo | - | - | 25363760 | De Rubeis S , et al. (2014) | |
c.998C>G | p.Leu330Val | missense_variant | De novo | - | Simplex | 36976648 | Gehin C et al. (2023) | |
c.561T>G | p.Asp187Glu | missense_variant | De novo | - | Simplex | 29346770 | Takata A , et al. (2018) | |
c.1360G>T | p.Val454Phe | missense_variant | Familial | Paternal | - | 36976648 | Gehin C et al. (2023) | |
c.1730C>T | p.Ala577Val | missense_variant | Familial | Maternal | - | 36976648 | Gehin C et al. (2023) | |
c.880A>G | p.Thr294Ala | missense_variant | De novo | - | Simplex | 25363768 | Iossifov I et al. (2014) | |
c.517G>A | p.Val173Ile | missense_variant | Unknown | - | Simplex | 37541188 | Sanchis-Juan A et al. (2023) | |
c.779C>T | p.Ser260Leu | missense_variant | De novo | - | Simplex | 25533962 | Deciphering Developmental Disorders Study (2014) |
Common Variants
No common variants reported.
SFARI Gene score
Suggestive Evidence, Syndromic


Score Delta: Score remained at 3S
criteria met
See SFARI Gene'scoring criteriaThe literature is replete with relatively small studies of candidate genes, using either common or rare variant approaches, which do not reach the criteria set out for categories 1 and 2. Genes that had two such lines of supporting evidence were placed in category 3, and those with one line of evidence were placed in category 4. Some additional lines of "accessory evidence" (indicated as "acc" in the score cards) could also boost a gene from category 4 to 3.
The syndromic category includes mutations that are associated with a substantial degree of increased risk and consistently linked to additional characteristics not required for an ASD diagnosis. If there is independent evidence implicating a gene in idiopathic ASD, it will be listed as "#S" (e.g., 2S, 3S, etc.). If there is no such independent evidence, the gene will be listed simply as "S."
7/1/2023
