Human Gene Module / Chromosome 4 / CRMP1

CRMP1collapsin response mediator protein 1

SFARI Gene Score
3
Suggestive Evidence Criteria 3.1
Autism Reports / Total Reports
7 / 9
Rare Variants / Common Variants
10 / 0
Aliases
-
Associated Syndromes
-
Chromosome Band
4p16.2
Associated Disorders
-
Relevance to Autism

De novo variants in the CRMP1 gene have been reported to cause a neurodevelopmental disorder characterized by developmental delay, intellectual disability, and behavioral abnormalities; autism spectrum disorder was diagnosed in an individual with a de novo missense variant that was experimentally shown to impair CRMP1B homo-oligomerization and attenuate neurite outgrowth in mouse cortical neurons in Ravindran et al., 2022 and in an individual with a de novo frameshift variant in Liu et al., 2024. Additional de novo variants in the CRMP1 gene, including two de novo missense variants that were not reported in control databases and were predicted to be damaging by CADD, have been reported in ASD probands from the Simons Simplex Collection, the SPARK cohort, the Autism Sequencing Consortium, and a Korean ASD cohort (Satterstrom et al., 2020; Zhou et al., 2022; Kim et al., 2024). Several studies have previously reported that maternal autoantibody reactivity to CRMP1 was associated with elevated severity of ASD (Braunschweig et al., 2013; Ramirez-Celis et al., 2021; Ramirez-Celis et al., 2022).

Molecular Function

This gene encodes a member of a family of cytosolic phosphoproteins expressed exclusively in the nervous system. The encoded protein is thought to be a part of the semaphorin signal transduction pathway implicated in semaphorin-induced growth cone collapse during neural development.

SFARI Genomic Platforms
Reports related to CRMP1 (9 Reports)
# Type Title Author, Year Autism Report Associated Disorders
1 Support - D Braunschweig et al. (2013) Yes -
2 Support - Naoya Yamashita et al. (2013) No -
3 Support Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism Satterstrom FK et al. (2020) Yes -
4 Support - Alexandra Ramirez-Celis et al. (2021) Yes -
5 Support - Alexandra Ramirez-Celis et al. (2022) Yes -
6 Support - Zhou X et al. (2022) Yes -
7 Support - Ethiraj Ravindran et al. (2022) No ASD
8 Support - Soo-Whee Kim et al. (2024) Yes -
9 Primary - Juan Liu et al. (2024) Yes -
Rare Variants   (10)
Status Allele Change Residue Change Variant Type Inheritance Pattern Parental Transmission Family Type PubMed ID Author, Year
c.1242G>A p.Ala414= synonymous_variant De novo - - 35982159 Zhou X et al. (2022)
c.564G>A p.Thr188= synonymous_variant De novo - - 39334436 Soo-Whee Kim et al. (2024)
c.1966T>C p.Ser656Pro missense_variant De novo - - 39334436 Soo-Whee Kim et al. (2024)
c.883-6C>T p.? splice_region_variant De novo - - 31981491 Satterstrom FK et al. (2020)
c.1571T>G p.Val524Gly missense_variant De novo - Simplex 35982159 Zhou X et al. (2022)
c.1786G>A p.Val596Ile missense_variant De novo - Simplex 35982159 Zhou X et al. (2022)
c.1052T>C p.Phe351Ser missense_variant De novo - Simplex 36511780 Ethiraj Ravindran et al. (2022)
c.1280C>T p.Thr427Met missense_variant De novo - Simplex 36511780 Ethiraj Ravindran et al. (2022)
c.1766C>T p.Pro589Leu missense_variant De novo - Simplex 36511780 Ethiraj Ravindran et al. (2022)
c.1755delG p.Lys586ArgfsTer75 frameshift_variant De novo - Simplex 39758889 Juan Liu et al. (2024)
Common Variants  

No common variants reported.

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