GABRG2gamma-aminobutyric acid type A receptor subunit gamma 2
Autism Reports / Total Reports
7 / 11Rare Variants / Common Variants
19 / 0Aliases
-Associated Syndromes
-Chromosome Band
5q34Associated Disorders
-Relevance to Autism
Multiple de novo variants in the GABRG2 gene, including a de novo loss-of-function variant and several de novo missense variants that are predicted to be deleterious, have been identified in ASD probands (De Rubeis et al., 2014; Zhou et al., 2022; Miyake et al., 2023); two of the ASD-associated missense variants in this gene had previously been identified in individuals with developmental and epileptic encephalpathy in Shen et al., 2016 and experimentally shown to result in reduced surface expression and decreased GABA-evoked whole-cell current amplitudes. Additional loss-of-function and missense variants with CADD scores > 30 were reported in individuals with a primary diagnosis of ASD in Wang et al., 2020. Hand stereotypies were reported in 1 of 8 individuals with de novo GABRG2 missense variants resulting in developmental and epileptic encephalopathy in Shen et al., 2016, and autism spectrum disorder was diagnosed in a patient with a p.Pro83Ser missense variant that had previously been identified in a family with idiopathic generalized epilepsy in Komulainen-Ebrahim et al., 2019. A polymorphism in the GABRG2 gene had previously been shown to be overrepresented in ASD cases by haplotype analysis (Sesarini et al., 2015).
Molecular Function
This gene encodes a gamma-aminobutyric acid (GABA) receptor. GABA is the major inhibitory neurotransmitter in the mammlian brain, where it acts at GABA-A receptors, which are ligand-gated chloride channels. GABA-A receptors are pentameric, consisting of proteins from several subunit classes: alpha, beta, gamma, delta and rho. Mutations in this gene are responsible for developmental and epileptic encephalopathy-74 (DEE74; OMIM 618396) and familial febrile seizures-8 (FEB8; OMIM 607681).
External Links
SFARI Genomic Platforms
Reports related to GABRG2 (11 Reports)
# | Type | Title | Author, Year | Autism Report | Associated Disorders |
---|---|---|---|---|---|
1 | Negative Association | Identification of significant association and gene-gene interaction of GABA receptor subunit genes in autism | Ma DQ , et al. (2005) | Yes | - |
2 | Negative Association | - | Sesarini CV et al. (2014) | Yes | - |
3 | Support | Synaptic, transcriptional and chromatin genes disrupted in autism | De Rubeis S , et al. (2014) | Yes | - |
4 | Positive Association | - | Sesarini CV et al. (2015) | Yes | - |
5 | Support | - | Shen D et al. (2017) | No | Stereotypy |
6 | Support | - | Komulainen-Ebrahim J et al. (2019) | No | ASD, stereotypy |
7 | Support | Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders | Wang T et al. (2020) | Yes | ID |
8 | Support | - | Zhou X et al. (2022) | Yes | - |
9 | Primary | - | Miyake N et al. (2023) | Yes | - |
10 | Support | - | Jiahui Sui et al. (2024) | No | - |
11 | Support | - | Purvi Majethia et al. (2024) | No | - |
Rare Variants (19)
Status | Allele Change | Residue Change | Variant Type | Inheritance Pattern | Parental Transmission | Family Type | PubMed ID | Author, Year |
---|---|---|---|---|---|---|---|---|
c.44C>A | p.Ser15Ter | stop_gained | Unknown | - | - | 33004838 | Wang T et al. (2020) | |
c.889G>A | p.Gly297Arg | missense_variant | Unknown | - | - | 33004838 | Wang T et al. (2020) | |
c.1094C>T | p.Ser365Leu | missense_variant | Unknown | - | - | 33004838 | Wang T et al. (2020) | |
c.1291C>T | p.Arg431Cys | missense_variant | Unknown | - | - | 33004838 | Wang T et al. (2020) | |
c.1375G>T | p.Val459Phe | missense_variant | De novo | - | - | 35982159 | Zhou X et al. (2022) | |
c.968G>A | p.Arg323Gln | missense_variant | De novo | - | - | 25363760 | De Rubeis S , et al. (2014) | |
c.316G>A | p.Ala106Thr | missense_variant | De novo | - | Simplex | 27864268 | Shen D et al. (2017) | |
c.320T>C | p.Ile107Thr | missense_variant | De novo | - | Simplex | 27864268 | Shen D et al. (2017) | |
c.844C>T | p.Pro282Ser | missense_variant | De novo | - | Simplex | 27864268 | Shen D et al. (2017) | |
c.967C>T | p.Arg323Trp | missense_variant | De novo | - | Simplex | 27864268 | Shen D et al. (2017) | |
c.968G>A | p.Cys323Tyr | missense_variant | De novo | - | Simplex | 27864268 | Shen D et al. (2017) | |
c.1027T>C | p.Phe343Leu | missense_variant | De novo | - | Simplex | 27864268 | Shen D et al. (2017) | |
c.853C>G | p.Leu285Val | missense_variant | De novo | - | - | 38374498 | Purvi Majethia et al. (2024) | |
c.316G>A | p.Ala106Thr | missense_variant | De novo | - | Simplex | 36973392 | Miyake N et al. (2023) | |
c.1374del | p.Asp458GlufsTer85 | frameshift_variant | De novo | - | - | 35982159 | Zhou X et al. (2022) | |
c.42_43delinsAA | p.Tyr14_Ser15delinsTer | stop_gained | Unknown | - | - | 33004838 | Wang T et al. (2020) | |
c.844C>A | p.Pro282Thr | missense_variant | De novo | - | Simplex | 31004928 | Komulainen-Ebrahim J et al. (2019) | |
c.917C>T | p.Ser306Phe | missense_variant | De novo | - | Simplex | 31004928 | Komulainen-Ebrahim J et al. (2019) | |
c.247C>T | p.Pro83Ser | missense_variant | Familial | Paternal | Multiplex | 31004928 | Komulainen-Ebrahim J et al. (2019) |
Common Variants
No common variants reported.
SFARI Gene score
Suggestive Evidence
Score Delta: Score remained at 3
criteria met
See SFARI Gene'scoring criteriaThe literature is replete with relatively small studies of candidate genes, using either common or rare variant approaches, which do not reach the criteria set out for categories 1 and 2. Genes that had two such lines of supporting evidence were placed in category 3, and those with one line of evidence were placed in category 4. Some additional lines of "accessory evidence" (indicated as "acc" in the score cards) could also boost a gene from category 4 to 3.
7/1/2023
Increased from to 3
Krishnan Probability Score
Score 0.59279846587765
Ranking 464/25841 scored genes
[Show Scoring Methodology]
ExAC Score
Score 0.95854339815542
Ranking 2557/18225 scored genes
[Show Scoring Methodology]
Sanders TADA Score
Score 0.71107613427568
Ranking 1230/18665 scored genes
[Show Scoring Methodology]
Zhang D Score
Score 0.23903287598109
Ranking 3634/20870 scored genes
[Show Scoring Methodology]