GGNBP2gametogenetin binding protein 2
Autism Reports / Total Reports
3 / 3Rare Variants / Common Variants
4 / 0Aliases
GGNBP2, DIF-3, DIF3, LCRG1, LZK1, ZFP403, ZNF403Associated Syndromes
-Chromosome Band
17q12Associated Disorders
-Relevance to Autism
De novo loss-of-function (LoF) variants in the GGNBP2 gene were identified in an ASD proband from the Autism Sequencing Consortium (De Rubeis et al., 2014) and an ASD proband from a cohort of 262 Japanese trios (Takata et al., 2018). TADA-Denovo analysis using a combined dataset of previously published cohorts from the Simons Simplex Collection and the Autism Sequencing Consortium, as well as the Japanese ASD cohort from Takata et al., 2018, identified GGNBP2 as a gene significantly enriched in damaging de novo mutations in ASD cases (pBH < 0.05).
Molecular Function
May be involved in spermatogenesis.
External Links
SFARI Genomic Platforms
Reports related to GGNBP2 (3 Reports)
# | Type | Title | Author, Year | Autism Report | Associated Disorders |
---|---|---|---|---|---|
1 | Primary | Synaptic, transcriptional and chromatin genes disrupted in autism | De Rubeis S , et al. (2014) | Yes | - |
2 | Recent Recommendation | Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder | Takata A , et al. (2018) | Yes | - |
3 | Support | - | Zhou X et al. (2022) | Yes | - |
Rare Variants (4)
Status | Allele Change | Residue Change | Variant Type | Inheritance Pattern | Parental Transmission | Family Type | PubMed ID | Author, Year |
---|---|---|---|---|---|---|---|---|
c.1681C>T | p.Arg561Ter | stop_gained | De novo | - | - | 25363760 | De Rubeis S , et al. (2014) | |
c.2079G>A | p.Thr693%3D | synonymous_variant | De novo | - | - | 35982159 | Zhou X et al. (2022) | |
c.673C>T | p.Arg225Ter | stop_gained | De novo | - | Simplex | 29346770 | Takata A , et al. (2018) | |
c.1926dup | p.Ile643TyrfsTer5 | frameshift_variant | De novo | - | - | 35982159 | Zhou X et al. (2022) |
Common Variants
No common variants reported.
SFARI Gene score
Strong Candidate
De novo loss-of-function (LoF) variants in the GGNBP2 gene were identified in an ASD proband from the Autism Sequencing Consortium (De Rubeis et al., 2014) and an ASD proband from a cohort of 262 Japanese trios (Takata et al., 2018). TADA-Denovo analysis using a combined dataset of previously published cohorts from the Simons Simplex Collection and the Autism Sequencing Consortium, as well as the Japanese ASD cohort from Takata et al., 2018, identified GGNBP2 as a gene significantly enriched in damaging de novo mutations in ASD cases (pBH < 0.05).
Score Delta: Score remained at 2
criteria met
See SFARI Gene'scoring criteriaWe considered a rigorous statistical comparison between cases and controls, yielding genome-wide statistical significance, with independent replication, to be the strongest possible evidence for a gene. These criteria were relaxed slightly for category 2.
10/1/2019
Decreased from 3 to 2
New Scoring Scheme
Description
De novo loss-of-function (LoF) variants in the GGNBP2 gene were identified in an ASD proband from the Autism Sequencing Consortium (De Rubeis et al., 2014) and an ASD proband from a cohort of 262 Japanese trios (Takata et al., 2018). TADA-Denovo analysis using a combined dataset of previously published cohorts from the Simons Simplex Collection and the Autism Sequencing Consortium, as well as the Japanese ASD cohort from Takata et al., 2018, identified GGNBP2 as a gene significantly enriched in damaging de novo mutations in ASD cases (pBH < 0.05).
Reports Added
[New Scoring Scheme]7/1/2018
Increased from to 3
Description
De novo loss-of-function (LoF) variants in the GGNBP2 gene were identified in an ASD proband from the Autism Sequencing Consortium (De Rubeis et al., 2014) and an ASD proband from a cohort of 262 Japanese trios (Takata et al., 2018). TADA-Denovo analysis using a combined dataset of previously published cohorts from the Simons Simplex Collection and the Autism Sequencing Consortium, as well as the Japanese ASD cohort from Takata et al., 2018, identified GGNBP2 as a gene significantly enriched in damaging de novo mutations in ASD cases (pBH < 0.05).
Krishnan Probability Score
Score 0.48448126691053
Ranking 7527/25841 scored genes
[Show Scoring Methodology]
ExAC Score
Score 0.99992911200978
Ranking 628/18225 scored genes
[Show Scoring Methodology]
Sanders TADA Score
Score 0.26182327271984
Ranking 151/18665 scored genes
[Show Scoring Methodology]
Zhang D Score
Score 0.29274937102375
Ranking 2854/20870 scored genes
[Show Scoring Methodology]
CNVs associated with GGNBP2(1 CNVs)
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17q12 | 77 | Deletion-Duplication | 117 / 510 |