HERC1HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
Autism Reports / Total Reports
7 / 14Rare Variants / Common Variants
18 / 0Aliases
-Associated Syndromes
-Chromosome Band
15q22.31Associated Disorders
-Relevance to Autism
De novo nonsense variants in the HERC1 gene have been identified in a Japanese ASD proband (Hashimoto et al., 2016) and in an ASD proband from the Autism Sequencing Consortium (Satterstrom et al., 2020), while an inherited nonsense variant in this gene was observed in an ASD proband from the iHART cohort (Ruzzo et al., 2019). Additional de novo variants in this gene were identified in ASD probands from the Simons Simplex Collection (Iossifov et al., 2014). Limited social interaction had previously been observed in an individual with MDFPMR (Nguyen et al., 2016). Roy et al., 2021 found that HERC1 exhibited high expression in the anterodorsal thalamus (AD) of mice, and that knockdown of HERC1 in AD thalamus resulted in memory deficits and neuronal hyperexcitability, phenotypes that were also observed in AD thalamus-specific PTCHD1 knock-down mice.
Molecular Function
This gene encodes a member of the HERC protein family. This protein stimulates guanine nucleotide exchange on ARF1 and Rab proteins. This protein may be involved in membrane transport processes. Biallelic variants in the HERC1 gene are responsible for macrocephaly, dysmorphic facies, and psychomotor retardation (MDFPMR; OMIM 617011), an autosomal recessive neurodevelopmental disorder characterized by large head and somatic overgrowth apparent at birth followed by global developmental delay (Ortega-Recalde et al., 2015; Nguyen et al., 2016; Aggarwal et al. 2016; Schwarz et al., 2020).
External Links
SFARI Genomic Platforms
Reports related to HERC1 (14 Reports)
# | Type | Title | Author, Year | Autism Report | Associated Disorders |
---|---|---|---|---|---|
1 | Support | The contribution of de novo coding mutations to autism spectrum disorder | Iossifov I et al. (2014) | Yes | - |
2 | Support | - | Ortega-Recalde O et al. (2015) | No | Epilepsy/seizures |
3 | Support | - | Nguyen LS et al. (2016) | No | Limited social interaction |
4 | Primary | Whole-exome sequencing and neurite outgrowth analysis in autism spectrum disorder | Hashimoto R , et al. (2015) | Yes | - |
5 | Support | - | Aggarwal S et al. (2016) | No | - |
6 | Support | Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks | Ruzzo EK , et al. (2019) | Yes | - |
7 | Support | Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism | Satterstrom FK et al. (2020) | Yes | - |
8 | Support | - | Schwarz JM et al. (Sep-) | No | ADHD, epilepsy/seizures |
9 | Support | - | Roy DS et al. (2021) | No | - |
10 | Support | - | Woodbury-Smith M et al. (2022) | Yes | - |
11 | Recent Recommendation | - | Singh T et al. (2022) | No | - |
12 | Support | - | Zhou X et al. (2022) | Yes | - |
13 | Support | - | Cirnigliaro M et al. (2023) | Yes | - |
14 | Support | - | Thomas V Fernandez et al. (2023) | No | - |
Rare Variants (18)
Status | Allele Change | Residue Change | Variant Type | Inheritance Pattern | Parental Transmission | Family Type | PubMed ID | Author, Year |
---|---|---|---|---|---|---|---|---|
c.1487C>A | p.Ser496Ter | stop_gained | De novo | - | - | 35982159 | Zhou X et al. (2022) | |
c.7357A>G | p.Ser2453Gly | missense_variant | De novo | - | - | 35982159 | Zhou X et al. (2022) | |
c.13631T>C | p.Val4544Ala | missense_variant | De novo | - | - | 35982159 | Zhou X et al. (2022) | |
c.7539C>T | p.Leu2513%3D | synonymous_variant | De novo | - | - | 35982159 | Zhou X et al. (2022) | |
c.12364C>T | p.Gln4122Ter | stop_gained | De novo | - | - | 31981491 | Satterstrom FK et al. (2020) | |
c.5117A>C | p.Tyr1706Ser | missense_variant | De novo | - | Simplex | 35982159 | Zhou X et al. (2022) | |
c.12460A>T | p.Lys4154Ter | stop_gained | De novo | - | Simplex | 26582266 | Hashimoto R , et al. (2015) | |
c.3446T>C | p.Ile1149Thr | missense_variant | De novo | - | Simplex | 25363768 | Iossifov I et al. (2014) | |
c.11423A>C | p.Asn3808Thr | missense_variant | Unknown | - | - | 35205252 | Woodbury-Smith M et al. (2022) | |
c.11036G>A | p.Arg3679His | missense_variant | De novo | - | Simplex | 25363768 | Iossifov I et al. (2014) | |
c.11833C>T | p.Gln3945Ter | stop_gained | Familial | Maternal | Multiplex | 31398340 | Ruzzo EK , et al. (2019) | |
c.9748C>T | p.Arg3250Ter | stop_gained | Familial | Both parents | Simplex | 26153217 | Nguyen LS et al. (2016) | |
c.4906-2A>C | - | splice_site_variant | Familial | Both parents | Multiplex | 27108999 | Aggarwal S et al. (2016) | |
c.11901+1G>A | - | splice_site_variant | Familial | Maternal | Multiplex | 37506195 | Cirnigliaro M et al. (2023) | |
c.4466G>A | p.Ser1489Asn | missense_variant | De novo | - | Simplex | 37788244 | Thomas V Fernandez et al. (2023) | |
c.2625G>A | p.Trp875Ter | stop_gained | Familial | Maternal | Multiplex | 26138117 | Ortega-Recalde O et al. (2015) | |
14072G>C | p.Arg4691Pro | missense_variant | Familial | Both parents | Multiplex | 32921582 | Schwarz JM et al. (Sep-) | |
c.13559G>A | p.Gly4520Glu | missense_variant | Familial | Paternal | Multiplex | 26138117 | Ortega-Recalde O et al. (2015) |
Common Variants
No common variants reported.
SFARI Gene score
Strong Candidate, Syndromic
Score Delta: Score remained at 2S
criteria met
See SFARI Gene'scoring criteriaWe considered a rigorous statistical comparison between cases and controls, yielding genome-wide statistical significance, with independent replication, to be the strongest possible evidence for a gene. These criteria were relaxed slightly for category 2.
The syndromic category includes mutations that are associated with a substantial degree of increased risk and consistently linked to additional characteristics not required for an ASD diagnosis. If there is independent evidence implicating a gene in idiopathic ASD, it will be listed as "#S" (e.g., 2S, 3S, etc.). If there is no such independent evidence, the gene will be listed simply as "S."
4/1/2022
Increased from to 2S
Krishnan Probability Score
Score 0.4988635035882
Ranking 2206/25841 scored genes
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ExAC Score
Score 0.99999999999837
Ranking 43/18225 scored genes
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Sanders TADA Score
Score 0.95007094492536
Ranking 18346/18665 scored genes
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Zhang D Score
Score 0.46730431381646
Ranking 769/20870 scored genes
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