MACF1microtubule actin crosslinking factor 1
Autism Reports / Total Reports
7 / 9Rare Variants / Common Variants
20 / 0Aliases
-Associated Syndromes
-Chromosome Band
1p34.3Associated Disorders
-Relevance to Autism
Multiple de novo variants in the MACF1 gene, including several missense variants, have been identified in ASD probands (Iossifov et al., 2014; Yuen et al., 2017; Satterstrom et al., 2020; Zhou et al., 2022), while inherited missense variants in this gene were identified in at least two diagnosed autistic individuals and absent in all non-autistic individuals in two separate multiplex ASD families in More et al., 2023. Heterozygous mutations in MACF1 are responsible for lissencephaly-9 with complex brainstem malformation (LIS9; OMIM 618325), an autosomal dominant neurologic disorder characterized by global developmental delay apparent since infancy, impaired intellectual development with poor or absent speech, and sometimes abnormal or involuntary movements associated with abnormal brain imaging that typically shows pachygyria, lissencephaly, and malformation of the brainstem consistent with a neuronal migration defect (Dobyns et al., 2018); two of the eight individuals with this disorder in this report presented with hand stereotypies. Macf1-mutant mice have been shown to exhibit social deficits and aberrant emotional behaviors (Ka et al., 2022).
Molecular Function
This gene encodes a large protein containing numerous spectrin and leucine-rich repeat (LRR) domains. The encoded protein is a member of a family of proteins that form bridges between different cytoskeletal elements. This protein facilitates actin-microtubule interactions at the cell periphery and couples the microtubule network to cellular junctions. Deletion of Macf1 in the mouse cerebral cortex during cortical development results in double cortex/subcortical band heterotopia and disrupted cortical lamination (Ka et al., 2022).
External Links
SFARI Genomic Platforms
Reports related to MACF1 (9 Reports)
# | Type | Title | Author, Year | Autism Report | Associated Disorders |
---|---|---|---|---|---|
1 | Primary | The contribution of de novo coding mutations to autism spectrum disorder | Iossifov I et al. (2014) | Yes | - |
2 | Support | Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder | C Yuen RK et al. (2017) | Yes | - |
3 | Support | Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder | Takata A , et al. (2018) | Yes | - |
4 | Support | - | Dobyns WB et al. (2018) | No | Stereotypy |
5 | Support | Both rare and common genetic variants contribute to autism in the Faroe Islands | Leblond CS , et al. (2019) | Yes | - |
6 | Support | Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism | Satterstrom FK et al. (2020) | Yes | - |
7 | Support | - | Ka M et al. (2022) | No | Social deficits |
8 | Support | - | Zhou X et al. (2022) | Yes | - |
9 | Support | - | More RP et al. (2023) | Yes | - |
Rare Variants (20)
Status | Allele Change | Residue Change | Variant Type | Inheritance Pattern | Parental Transmission | Family Type | PubMed ID | Author, Year |
---|---|---|---|---|---|---|---|---|
- | - | copy_number_loss | De novo | - | - | 30471716 | Dobyns WB et al. (2018) | |
c.4629+3858A>G | - | intron_variant | De novo | - | - | 31981491 | Satterstrom FK et al. (2020) | |
c.7366A>G | p.Lys2456Glu | missense_variant | De novo | - | - | 35982159 | Zhou X et al. (2022) | |
c.4629+8163_4629+8164del | - | intron_variant | De novo | - | - | 35982159 | Zhou X et al. (2022) | |
c.11308A>G | p.Met3770Val | missense_variant | De novo | - | - | 35982159 | Zhou X et al. (2022) | |
c.14116G>C | p.Gly4706Arg | missense_variant | De novo | - | - | 30471716 | Dobyns WB et al. (2018) | |
c.15530G>T | p.Cys5177Phe | missense_variant | De novo | - | - | 30471716 | Dobyns WB et al. (2018) | |
c.15682G>T | p.Asp5228Tyr | missense_variant | De novo | - | - | 30471716 | Dobyns WB et al. (2018) | |
c.15688T>G | p.Cys5230Gly | missense_variant | De novo | - | - | 30471716 | Dobyns WB et al. (2018) | |
c.427C>T | p.Leu143= | synonymous_variant | De novo | - | Simplex | 28263302 | C Yuen RK et al. (2017) | |
c.10801C>T | p.Arg3601Ter | stop_gained | Unknown | - | Simplex | 30675382 | Leblond CS , et al. (2019) | |
c.12480T>C | p.Ile4160= | synonymous_variant | De novo | - | - | 31981491 | Satterstrom FK et al. (2020) | |
c.2444G>T | p.Cys815Phe | missense_variant | Familial | - | Multiplex | 36702863 | More RP et al. (2023) | |
c.8941G>T | p.Ala2981Ser | missense_variant | Familial | - | Multiplex | 36702863 | More RP et al. (2023) | |
c.6991A>G | p.Met2331Val | missense_variant | De novo | - | Simplex | 25363768 | Iossifov I et al. (2014) | |
c.11584_11585delinsAT | p.Gln3862Ile | missense_variant | De novo | - | - | 35982159 | Zhou X et al. (2022) | |
c.18004G>A | p.Glu6002Lys | missense_variant | Unknown | - | Simplex | 30675382 | Leblond CS , et al. (2019) | |
c.4629+6036_4629+6037dup | - | intron_variant | De novo | - | Simplex | 31981491 | Satterstrom FK et al. (2020) | |
c.14386del | p.Gln4796SerfsTer10 | frameshift_variant | De novo | - | Simplex | 29346770 | Takata A , et al. (2018) | |
c.15689G>T | p.Cys5230Phe | missense_variant | De novo | - | Multiplex (monozygotic twins) | 30471716 | Dobyns WB et al. (2018) |
Common Variants
No common variants reported.
SFARI Gene score
Suggestive Evidence, Syndromic
Score Delta: Score remained at 3S
criteria met
See SFARI Gene'scoring criteriaThe literature is replete with relatively small studies of candidate genes, using either common or rare variant approaches, which do not reach the criteria set out for categories 1 and 2. Genes that had two such lines of supporting evidence were placed in category 3, and those with one line of evidence were placed in category 4. Some additional lines of "accessory evidence" (indicated as "acc" in the score cards) could also boost a gene from category 4 to 3.
The syndromic category includes mutations that are associated with a substantial degree of increased risk and consistently linked to additional characteristics not required for an ASD diagnosis. If there is independent evidence implicating a gene in idiopathic ASD, it will be listed as "#S" (e.g., 2S, 3S, etc.). If there is no such independent evidence, the gene will be listed simply as "S."
4/1/2023
Increased from to 3S
Krishnan Probability Score
Score 0.50369154801148
Ranking 1938/25841 scored genes
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ExAC Score
Score 1
Ranking 2/18225 scored genes
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Iossifov Probability Score
Score 0.994
Ranking 20/239 scored genes
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Sanders TADA Score
Score 0.95081226178184
Ranking 18638/18665 scored genes
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Zhang D Score
Score 0.31081509766811
Ranking 2578/20870 scored genes
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