NAA10N-alpha-acetyltransferase 10, NatA catalytic subunit
Autism Reports / Total Reports
3 / 13Rare Variants / Common Variants
45 / 0Aliases
-Associated Syndromes
Ogden syndrome, DD, ID, epilepsy/seizures, Ogden syndrome, DD, ID, Ogden syndrome, ASD, DD, epilepsy/seizures, Ogden syndrome, DD, epilepsy/seizuresChromosome Band
Xq28Associated Disorders
-Relevance to Autism
Mutations in the NAA10 gene are responsible for Ogden syndrome (OMIM 300855), an X-linked neurodevelopmental disorder characterized by postnatal growth failure, severely delayed psychomotor development, variable dysmorphic features, and hypotonia; a subset of individuals with this syndrome have also presented with autism spectrum disorder or autistic features/stereotypy (Popp et al., 2015; Saunier et al., 2016; Sidhu et al., 2017; Valentine et al., 2018; Cheng et al., 2019; Bader et al., 2020; Maini et al., 2021; McTiernan et al., 2022; Lyon et al., 2023). Mutations in this gene are also responsible for a syndromic form of microphthalmia (MCOPS1; OMIM 309800), an X-linked disorder characterized by unilateral or bilateral microphthalmia or anophthalmia with frequently observed extraocular features that include impaired intellectual development, large and dysplastic ears with skin tags, high-arched or cleft palate, dental anomalies, urogenital anomalies, and skeletal manifestations including lordosis or scoliosis, clinodactyly, syndactyly, brachydactyly, and abnormal thumbs; worsening autistic behavior was observed in one of three brothers with this condition who had a maternally-inherited splice-site variant in the NAA10 gene (Esmailpour et al., 2014). Missense variants in the NAA10 gene have also been identified in ASD probands from WES/WGS studies (Mahjani et al., 2021; Chan et al., 2022).
Molecular Function
N-alpha-acetylation is among the most common post-translational protein modifications in eukaryotic cells. This process involves the transfer of an acetyl group from acetyl-coenzyme A to the alpha-amino group on a nascent polypeptide and is essential for normal cell function. This gene encodes an N-terminal acetyltransferase that functions as the catalytic subunit of the major amino-terminal acetyltransferase A complex.
External Links
SFARI Genomic Platforms
Reports related to NAA10 (13 Reports)
# | Type | Title | Author, Year | Autism Report | Associated Disorders |
---|---|---|---|---|---|
1 | Support | - | Esmailpour T et al. (2014) | No | Autistic behavior, epilepsy/seizures |
2 | Support | - | Popp B et al. (2015) | No | Autistic features, stereotypy |
3 | Support | - | Casey JP et al. (2015) | No | - |
4 | Support | - | Saunier C et al. (2016) | No | ADHD, epilepsy/seizures, stereotypy |
5 | Support | - | Sidhu M et al. (2017) | Yes | - |
6 | Support | - | Valentine V et al. (2018) | No | Stereotypy |
7 | Support | Phenotypic and biochemical analysis of an international cohort of individuals with variants in NAA10 and NAA15 | Cheng H , et al. (2019) | No | ASD or autistic features, ADHD, epilepsy/seizures, |
8 | Support | - | Bader I et al. (2020) | No | Stereotypy |
9 | Support | - | Maini I et al. (2021) | No | Stereotypy |
10 | Support | - | Mahjani B et al. (2021) | Yes | - |
11 | Support | - | McTiernan N et al. (2022) | No | Autistic features |
12 | Support | - | Chan AJS et al. (2022) | Yes | - |
13 | Primary | - | Lyon GJ et al. (2023) | No | ASD, ADHD, epilepsy/seizures, stereotypy |
Rare Variants (45)
Status | Allele Change | Residue Change | Variant Type | Inheritance Pattern | Parental Transmission | Family Type | PubMed ID | Author, Year |
---|---|---|---|---|---|---|---|---|
c.22C>T | p.Pro8Ser | missense_variant | De novo | - | - | 37130971 | Lyon GJ et al. (2023) | |
c.30C>G | p.Asp10Glu | missense_variant | De novo | - | - | 37130971 | Lyon GJ et al. (2023) | |
c.47A>C | p.His16Pro | missense_variant | De novo | - | - | 37130971 | Lyon GJ et al. (2023) | |
c.92A>G | p.Tyr31Cys | missense_variant | De novo | - | - | 37130971 | Lyon GJ et al. (2023) | |
c.247C>T | p.Arg83Cys | missense_variant | De novo | - | - | 28967461 | Sidhu M et al. (2017) | |
c.247C>T | p.Arg83Cys | missense_variant | De novo | - | - | 37130971 | Lyon GJ et al. (2023) | |
c.29A>G | p.Asp10Gly | missense_variant | De novo | - | - | 31127942 | Cheng H , et al. (2019) | |
c.359A>C | p.His120Pro | missense_variant | De novo | - | - | 37130971 | Lyon GJ et al. (2023) | |
c.367T>C | p.Ser123Pro | missense_variant | De novo | - | - | 37130971 | Lyon GJ et al. (2023) | |
c.383T>C | p.Phe128Ser | missense_variant | De novo | - | - | 37130971 | Lyon GJ et al. (2023) | |
c.384T>G | p.Phe128Leu | missense_variant | De novo | - | - | 37130971 | Lyon GJ et al. (2023) | |
c.440T>C | p.Met147Thr | missense_variant | De novo | - | - | 37130971 | Lyon GJ et al. (2023) | |
c.445C>T | p.Arg149Trp | missense_variant | De novo | - | - | 37130971 | Lyon GJ et al. (2023) | |
c.247C>T | p.Arg83Cys | missense_variant | De novo | - | - | 31127942 | Cheng H , et al. (2019) | |
c.259G>T | p.Ala87Ser | missense_variant | De novo | - | - | 31127942 | Cheng H , et al. (2019) | |
c.311C>A | p.Ala104Asp | missense_variant | De novo | - | - | 31127942 | Cheng H , et al. (2019) | |
c.361C>G | p.Leu121Val | missense_variant | De novo | - | - | 31127942 | Cheng H , et al. (2019) | |
c.361C>G | p.Leu121Val | missense_variant | Unknown | - | - | 31127942 | Cheng H , et al. (2019) | |
c.384T>G | p.Phe128Leu | missense_variant | De novo | - | - | 31127942 | Cheng H , et al. (2019) | |
c.440T>C | p.Met147Thr | missense_variant | De novo | - | - | 31127942 | Cheng H , et al. (2019) | |
c.346C>G | p.Arg116Gly | missense_variant | De novo | - | - | 36309498 | Chan AJS et al. (2022) | |
c.247C>T | p.Arg83Cys | missense_variant | De novo | - | - | 27094817 | Saunier C et al. (2016) | |
c.247C>T | p.Arg83Cys | missense_variant | Unknown | - | - | 34615535 | Mahjani B et al. (2021) | |
c.346C>T | p.Arg116Trp | missense_variant | De novo | - | - | 27094817 | Saunier C et al. (2016) | |
c.382T>A | p.Phe128Ile | missense_variant | De novo | - | - | 27094817 | Saunier C et al. (2016) | |
c.384T>A | p.Phe128Leu | missense_variant | De novo | - | - | 27094817 | Saunier C et al. (2016) | |
c.47A>C | p.His16Pro | missense_variant | De novo | - | Simplex | 32698785 | Bader I et al. (2020) | |
c.319G>T | p.Val107Phe | missense_variant | De novo | - | Simplex | 25099252 | Popp B et al. (2015) | |
c.346C>T | p.Arg116Trp | missense_variant | De novo | - | Simplex | 25099252 | Popp B et al. (2015) | |
c.247C>T | p.Arg83Cys | missense_variant | De novo | - | Simplex | 34200686 | Maini I et al. (2021) | |
c.215T>C | p.Ile72Thr | missense_variant | Familial | Maternal | - | 37130971 | Lyon GJ et al. (2023) | |
c.215T>C | p.Ile72Thr | missense_variant | Familial | Maternal | - | 31127942 | Cheng H , et al. (2019) | |
c.32T>G | p.Leu11Arg | missense_variant | Unknown | Not maternal | - | 31127942 | Cheng H , et al. (2019) | |
c.346C>T | p.Arg116Trp | missense_variant | De novo | - | Simplex | 29957440 | Valentine V et al. (2018) | |
c.384T>G | p.Phe128Leu | missense_variant | De novo | - | Simplex | 35039925 | McTiernan N et al. (2022) | |
c.386A>C | p.Gln129Pro | missense_variant | De novo | - | Simplex | 35039925 | McTiernan N et al. (2022) | |
c.16G>C | p.Ala6Pro | missense_variant | Familial | Maternal | Simplex | 35039925 | McTiernan N et al. (2022) | |
c.426+2T>A | - | splice_site_variant | Familial | Maternal | Multiplex | 24431331 | Esmailpour T et al. (2014) | |
c.128A>C | p.Tyr43Ser | missense_variant | Familial | Maternal | Multiplex | 26522270 | Casey JP et al. (2015) | |
c.469G>A | p.Glu157Lys | missense_variant | Familial | Maternal | Simplex | 35039925 | McTiernan N et al. (2022) | |
c.455_458del | p.Thr152ArgfsTer6 | frameshift_variant | Familial | Maternal | - | 37130971 | Lyon GJ et al. (2023) | |
c.499_500del | p.Ser167GlnfsTer23 | frameshift_variant | Familial | Maternal | - | 37130971 | Lyon GJ et al. (2023) | |
c.410_413del | p.Thr137ArgfsTer6 | frameshift_variant | Familial | Maternal | Simplex | 31127942 | Cheng H , et al. (2019) | |
c.235C>T | p.Arg79Cys | missense_variant | Familial | Maternal | Extended multiplex | 35039925 | McTiernan N et al. (2022) | |
c.247C>T | p.Arg83Cys | missense_variant | De novo (germline mosaicism) | - | Multiplex | 27094817 | Saunier C et al. (2016) |
Common Variants
No common variants reported.
SFARI Gene score
Suggestive Evidence, Syndromic


Score Delta: Score remained at 3S
criteria met
See SFARI Gene'scoring criteriaThe literature is replete with relatively small studies of candidate genes, using either common or rare variant approaches, which do not reach the criteria set out for categories 1 and 2. Genes that had two such lines of supporting evidence were placed in category 3, and those with one line of evidence were placed in category 4. Some additional lines of "accessory evidence" (indicated as "acc" in the score cards) could also boost a gene from category 4 to 3.
The syndromic category includes mutations that are associated with a substantial degree of increased risk and consistently linked to additional characteristics not required for an ASD diagnosis. If there is independent evidence implicating a gene in idiopathic ASD, it will be listed as "#S" (e.g., 2S, 3S, etc.). If there is no such independent evidence, the gene will be listed simply as "S."
7/1/2023

Increased from to 3S
Krishnan Probability Score
Score 0.3270924461031
Ranking 25262/25841 scored genes
[Show Scoring Methodology]
ExAC Score
Score 0.18842779969779
Ranking 7104/18225 scored genes
[Show Scoring Methodology]
Sanders TADA Score
Score 0.9120645792719
Ranking 7813/18665 scored genes
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Zhang D Score
Score -0.091376908953155
Ranking 12029/20870 scored genes
[Show Scoring Methodology]