PAHPhenylalanine hydroxylase
Autism Reports / Total Reports
7 / 12Rare Variants / Common Variants
22 / 0Aliases
PAH, PH, PKU, PKU1Associated Syndromes
-Chromosome Band
12q23.2Associated Disorders
ID, ASDRelevance to Autism
Homozygous variants in the PAH gene were identified that segregated with ASD in two separate pedigrees (one multiplex, one simplex) consisting of affected children born to consanguineous parents (Yu et al., 2013).
Molecular Function
The PAH gene encodes the enzyme phenylalanine hydroxylase, which is the rate-limiting step in phenylalanine catabolism. Defects in PAH are the cause of phenylketonuria (PKU), non-phenylketonuria hyperphenylalaninemia (Non-PKU HPA), and hyperphenylalaninemia (HPA) [MIM:261600].
External Links
SFARI Genomic Platforms
Reports related to PAH (12 Reports)
# | Type | Title | Author, Year | Autism Report | Associated Disorders |
---|---|---|---|---|---|
1 | Primary | Using whole-exome sequencing to identify inherited causes of autism | Yu TW , et al. (2013) | Yes | - |
2 | Support | Diagnostic Yield and Novel Candidate Genes by Exome Sequencing in 152 Consanguineous Families With Neurodevelopmental Disorders | Reuter MS , et al. (2017) | No | ID |
3 | Support | The combination of whole-exome sequencing and copy number variation sequencing enables the diagnosis of rare neurological disorders | Jiao Q , et al. (2019) | No | - |
4 | Support | Diagnostic Yields of Trio-WES Accompanied by CNVseq for Rare Neurodevelopmental Disorders | Gao C , et al. (2019) | No | Autistic features |
5 | Support | Recessive gene disruptions in autism spectrum disorder | Doan RN , et al. (2019) | Yes | - |
6 | Support | Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks | Ruzzo EK , et al. (2019) | Yes | - |
7 | Support | Phenotype-to-genotype approach reveals head-circumference-associated genes in an autism spectrum disorder cohort | Wu H , et al. (2019) | Yes | Macrocephaly |
8 | Support | - | Brea-Fernández AJ et al. (2022) | No | - |
9 | Support | - | N.Y.) (07/2) | No | - |
10 | Support | - | Zhou X et al. (2022) | Yes | - |
11 | Support | - | Cirnigliaro M et al. (2023) | Yes | - |
12 | Support | - | Omri Bar et al. (2024) | Yes | OCD, ID |
Rare Variants (22)
Status | Allele Change | Residue Change | Variant Type | Inheritance Pattern | Parental Transmission | Family Type | PubMed ID | Author, Year |
---|---|---|---|---|---|---|---|---|
c.465T>G | p.Arg155%3D | synonymous_variant | De novo | - | - | 35901164 | N.Y.) (07/2) | |
c.468A>G | p.Ala156%3D | synonymous_variant | De novo | - | - | 35901164 | N.Y.) (07/2) | |
c.474G>A | p.Arg158%3D | synonymous_variant | De novo | - | - | 35901164 | N.Y.) (07/2) | |
c.159G>A | p.Arg53His | missense_variant | Familial | - | - | 30945278 | Jiao Q , et al. (2019) | |
c.567C>T | p.Thr189Ile | missense_variant | Familial | - | - | 30945278 | Jiao Q , et al. (2019) | |
c.441+1G>A | - | splice_site_variant | Familial | Paternal | Simplex | 31674007 | Wu H , et al. (2019) | |
c.729G>A | p.Arg243Gln | missense_variant | Familial | Paternal | - | 31178897 | Gao C , et al. (2019) | |
c.876C>T | p.Pro292Leu | missense_variant | Familial | Maternal | - | 31178897 | Gao C , et al. (2019) | |
c.783G>A | p.Arg261Gln | missense_variant | Unknown | - | Unknown | 31209396 | Doan RN , et al. (2019) | |
c.843C>T | p.Pro281Leu | missense_variant | Unknown | - | Unknown | 31209396 | Doan RN , et al. (2019) | |
c.688G>A | p.Val230Ile | missense_variant | Unknown | - | Simplex | 38256266 | Omri Bar et al. (2024) | |
c.1314C>T | p.Asn438%3D | synonymous_variant | De novo | - | Simplex | 35982159 | Zhou X et al. (2022) | |
c.1208C>T | p.Ala403Val | missense_variant | Unknown | - | Simplex | 38256266 | Omri Bar et al. (2024) | |
c.782C>T | p.Arg261Ter | stop_gained | Familial | Maternal | Multiplex | 31398340 | Ruzzo EK , et al. (2019) | |
c.815G>T | p.Gly272Ter | stop_gained | Familial | Paternal | Multiplex | 31398340 | Ruzzo EK , et al. (2019) | |
c.704C>T | p.Gln235Ter | stop_gained | Familial | Both parents | Multiplex | 23352163 | Yu TW , et al. (2013) | |
c.1315+1G>A | - | splice_site_variant | Familial | Maternal | - | 35322241 | Brea-Fernández AJ et al. (2022) | |
c.561G>A | p.Trp187Ter | stop_gained | Familial | Maternal | Multiplex | 37506195 | Cirnigliaro M et al. (2023) | |
c.194T>C | p.Ile65Thr | missense_variant | Familial | Paternal | - | 35322241 | Brea-Fernández AJ et al. (2022) | |
c.930C>T | p.Ser310Phe | missense_variant | Familial | Both parents | Simplex | 28097321 | Reuter MS , et al. (2017) | |
c.593_614del | p.Tyr198SerfsTer136 | inframe_deletion | Familial | Both parents | Simplex | 23352163 | Yu TW , et al. (2013) | |
c.1055del | p.Gly352ValfsTer48 | frameshift_variant | Familial | Maternal | Multiplex | 37506195 | Cirnigliaro M et al. (2023) |
Common Variants
No common variants reported.
SFARI Gene score
High Confidence
Score Delta: Score remained at 1
criteria met
See SFARI Gene'scoring criteriaWe considered a rigorous statistical comparison between cases and controls, yielding genome-wide statistical significance, with independent replication, to be the strongest possible evidence for a gene. These criteria were relaxed slightly for category 2.
4/1/2022
Decreased from 2 to 1
10/1/2019
Decreased from 3 to 2
New Scoring Scheme
Description
Homozygous variants in the PAH gene were found to segregate with ASD in two consanguineous families in Yu et al., 2013: a nonsense variant that segregated with ASD in a multiplex family, and an in-frame deletion of 7 amino acids that segregated with ASD in a simplex family. Defects in PAH are the cause of phenylketonuria (PKU), non-phenylketonuria hyperphenylalaninemia (Non-PKU HPA), and hyperphenylalaninemia (HPA) [MIM:261600].
7/1/2019
Decreased from 3 to 3
Description
Homozygous variants in the PAH gene were found to segregate with ASD in two consanguineous families in Yu et al., 2013: a nonsense variant that segregated with ASD in a multiplex family, and an in-frame deletion of 7 amino acids that segregated with ASD in a simplex family. Defects in PAH are the cause of phenylketonuria (PKU), non-phenylketonuria hyperphenylalaninemia (Non-PKU HPA), and hyperphenylalaninemia (HPA) [MIM:261600].
4/1/2019
Decreased from 3 to 3
Description
Homozygous variants in the PAH gene were found to segregate with ASD in two consanguineous families in Yu et al., 2013: a nonsense variant that segregated with ASD in a multiplex family, and an in-frame deletion of 7 amino acids that segregated with ASD in a simplex family. Defects in PAH are the cause of phenylketonuria (PKU), non-phenylketonuria hyperphenylalaninemia (Non-PKU HPA), and hyperphenylalaninemia (HPA) [MIM:261600].
1/1/2017
Decreased from 3 to 3
Description
Homozygous variants in the PAH gene were found to segregate with ASD in two consanguineous families in Yu et al., 2013: a nonsense variant that segregated with ASD in a multiplex family, and an in-frame deletion of 7 amino acids that segregated with ASD in a simplex family. Defects in PAH are the cause of phenylketonuria (PKU), non-phenylketonuria hyperphenylalaninemia (Non-PKU HPA), and hyperphenylalaninemia (HPA) [MIM:261600].
4/1/2016
Increased from to 3
Description
Homozygous variants in the PAH gene were found to segregate with ASD in two consanguineous families in Yu et al., 2013: a nonsense variant that segregated with ASD in a multiplex family, and an in-frame deletion of 7 amino acids that segregated with ASD in a simplex family. Defects in PAH are the cause of phenylketonuria (PKU), non-phenylketonuria hyperphenylalaninemia (Non-PKU HPA), and hyperphenylalaninemia (HPA) [MIM:261600].
Krishnan Probability Score
Score 0.49406809867308
Ranking 3842/25841 scored genes
[Show Scoring Methodology]
ExAC Score
Score 1.1951974462996E-10
Ranking 16913/18225 scored genes
[Show Scoring Methodology]
Sanders TADA Score
Score 0.68612488005344
Ranking 1074/18665 scored genes
[Show Scoring Methodology]
Larsen Cumulative Evidence Score
Score 18
Ranking 113/461 scored genes
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Zhang D Score
Score -0.46268604039162
Ranking 18929/20870 scored genes
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External PIN Data
Interactome
- Protein Binding
- DNA Binding
- RNA Binding
- Protein Modification
- Direct Regulation
- ASD-Linked Genes
Interaction Table
Interactor Symbol | Interactor Name | Interactor Organism | Interactor Type | Entrez ID | Uniprot ID |
---|---|---|---|---|---|
PAH | phenylalanine hydroxylase | Human | Protein Binding | 5053 | P00439 |