Human Gene Module / Chromosome 15 / TRPM7

TRPM7transient receptor potential cation channel subfamily M member 7

SFARI Gene Score
3
Suggestive Evidence Criteria 3.1
Autism Reports / Total Reports
5 / 8
Rare Variants / Common Variants
12 / 0
Aliases
-
Associated Syndromes
-
Chromosome Band
15q21.2
Associated Disorders
-
Relevance to Autism

Bosman et al., 2024 reported de novo missense variants in the TRPM7 gene in three unrelated individuals presenting with hypomagnesemia, autism spectrum disorder, and developmental delay; all three missense variants were shown experimentally to result in loss-of-function of TRPM7-mediated magnesium uptake in transfected HEK293 cells with no effects on expression or plasma membrane insertion. Rare genetic variation in TRPM7 had previously been associated with hypomagnesemia with or without seizures (Lei et al., 2022; Vargas-Poussou et al., 2023). Rare de novo missense variants in TRPM7 have also been identified in three ASD probands from the Simons Simplex Collection, the Autism Sequencing Consortium, and the SPARK cohort (Iossifov et al., 2014; Satterstrom et al., 2020; Zhou et al., 2022), while de novo loss-of-function variants in this gene have been reported in two ASD probands (Zhou et al., 2022; Fu et al., 2022).

Molecular Function

This gene belongs to the melastatin subfamily of transient receptor potential family of ion channels. The protein encoded by this gene is both an ion channel and a serine/threonine protein kinase. The kinase activity is essential for the ion channel function, which serves to increase intracellular calcium levels and to help regulate magnesium ion homeostasis. The encoded protein is involved in cytoskeletal organization, cell adhesion, cell migration and organogenesis. A heterozygous missense variant in this gene that was shown experimentally to increase susceptibility to inhibition by intracellular magnesium concentrations compared to wildtype channels (p.Thr1482Ile) is a cause of amyotrophic lateral sclerosis-parkinsonism/dementia complex of Guam (Hermosura et al., 2005). The gene may also be associated with defects of cardiac function.

SFARI Genomic Platforms
Reports related to TRPM7 (8 Reports)
# Type Title Author, Year Autism Report Associated Disorders
1 Support - Meredith C Hermosura et al. (2005) No -
2 Support The contribution of de novo coding mutations to autism spectrum disorder Iossifov I et al. (2014) Yes -
3 Support Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism Satterstrom FK et al. (2020) Yes -
4 Support - Rosa Vargas-Poussou et al. (2023) No DD, epilepsy/seizures
5 Support - Meifang Lei et al. (2022) No Hemiplegic migraines
6 Support - Zhou X et al. (2022) Yes -
7 Support - Fu JM et al. (2022) Yes -
8 Primary - Willem Bosman et al. (2024) Yes ADHD, epilepsy/seizures
Rare Variants   (12)
Status Allele Change Residue Change Variant Type Inheritance Pattern Parental Transmission Family Type PubMed ID Author, Year
c.4732+5A>C - splice_site_variant De novo - - 35982159 Zhou X et al. (2022)
c.1495-6T>C - splice_region_variant De novo - - 35982159 Zhou X et al. (2022)
c.3575G>A p.Gly1192Glu missense_variant De novo - - 35982159 Zhou X et al. (2022)
c.2999T>C p.Met1000Thr missense_variant De novo - - 39099563 Willem Bosman et al. (2024)
c.3136G>C p.Gly1046Arg missense_variant De novo - - 39099563 Willem Bosman et al. (2024)
c.3242T>G p.Leu1081Arg missense_variant De novo - - 39099563 Willem Bosman et al. (2024)
c.2435T>A p.Met812Lys missense_variant De novo - - 31981491 Satterstrom FK et al. (2020)
c.1135A>G p.Thr379Ala missense_variant De novo - Simplex 25363768 Iossifov I et al. (2014)
c.2852_2853dup p.Ala952MetfsTer13 frameshift_variant De novo - - 35982160 Fu JM et al. (2022)
c.2998A>G p.Met1000Val missense_variant De novo - Simplex 35712613 Meifang Lei et al. (2022)
c.3137G>A p.Gly1046Asp missense_variant De novo - Simplex 35561741 Rosa Vargas-Poussou et al. (2023)
c.3+1G>C - splice_site_variant Familial Maternal Extended multiplex 35561741 Rosa Vargas-Poussou et al. (2023)
Common Variants  

No common variants reported.

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